Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 655 / 0 Ankyrin repeat family protein (.1) AT5G60070 649 / 0 ankyrin repeat family protein (.1) AT5G02620 547 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 540 / 0 Ankyrin repeat family protein (.1) AT1G05640 516 / 6e-178 Ankyrin repeat family protein (.1) AT3G12360 367 / 2e-120 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 350 / 2e-113 Ankyrin repeat family protein (.1) AT2G01680 347 / 2e-113 Ankyrin repeat family protein (.1) AT1G34050 112 / 6e-26 Ankyrin repeat family protein (.1) AT5G54710 103 / 3e-23 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015224 [exp] 1012 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 564 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 554 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 524 / 0 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 406 / 5e-138 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 364 / 4e-119 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10025287 [exp] 348 / 1e-116 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10023460 [exp] 353 / 2e-115 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10034579 [exp] 352 / 4e-115 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099600 [exp] 755 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 733 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 675 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 632 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 609 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 502 / 1e-172 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 492 / 5e-168 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 369 / 4e-122 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 359 / 4e-118 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 355 / 7e-116 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10005432 pacid=23182244 polypeptide=Lus10005432 locus=Lus10005432.g ID=Lus10005432.BGIv1.0 annot-version=v1.0 ATGGACGAGACTCCGACGAGCTCCTCGCCGGCGATGCAGCACACGCCGGCGCCGAGGAAGAAGATAGCGAAGCAGCTGACGGGGAAGAAGGGGGACACGT CGCTGCATTCGGCGGCGAGGAGCGGGAACATGGAGGCGGTGGTGGAGATCCTCGCCGGAATGTCCGACGAGGAGGAGGAGCTGAGGGTGACGTTGGAGAA GCAGAACCAGTCCGGCGAGACGCCGTTGTATGTTGCGGCGGAGTACGGATATGTTGATCTTGTGAGGGAGATGATCAAGTATTGTGATCTCGCCGACGCC GGAATCAAGGCCAAGAATGGGTTCGACGCCTTCCACATTGCCGCCAAACAAGCTGATATCGATGTATTAAGGGTGTTAATGGAGGCATATCCAGAGCTAG CAATGACAGTGGATCTATCAAACACGACGGCATTACACACAGCAGCCATGCAAGGCCACATAAAGATCGTCAACTTTCTGCTCGAAGCCGCCGGGAGCAG CCTGGCCACCATTGCCCGGAGCAACGGCAAGACCGCCTTGCATTCCGTAGCCAGGAACGGGCACGTGGAGGTCACCCGGGCGCTGGTGACGGCGGAGCCA GGGATCGCGACAAGGACCGACAAAAAGGGCCAGACCGCGCTTCACATGGCGGTTAAAGGGCAGAAGATCGACGTGGTCGAGGAGCTGATCAGGGCGTCGC CAGAGACCTTGAACCTCTTGGACAATAAAGGGAACACCCCGTTGCATATCGCTAGCCGGAAAGGCAGAGCTCAGATTGTGAAGCTACTGCTCCAACACAA GGCAACAGACATCAAAGCCATAAACAGAACCTCCGAAACCGCACTCGACACGGCCGAGAAAATGGGCCAGCACGAAGTCAAAGCCATCCTCCAAGAATTC GGAGTACAGAGCGCCCAAGCCCTAAACGCTAAACCCCTCAACCCAGCCAAAGAGCTCAAACAGACCGTAAGCGACATCAAACACGAAGTCCACTACCAAT TGGAACACACCCGCCAGACCCGCCGCCGGGTCCAGGGGATCGCCAAACGCCTCAACAAAATGCATGCCGAGGGCCTGAACAACGCGATCAATTCGACCAC TGTGGTGGCCGTGTTGATCGCGACGGTGGCCTTCGCCGCGATCTTCACCGTCCCGGGCCAGTACGCCGACGACCCGGGAACAATCCGTCCGGGCCAGACC CTGGGCGAGGCGAACATCGCCCAGGGCGGAGCCCCCTTCATCGTCTTTTTTCTCTTCGATTCCGTAGCACTGTTCATCTCGCTGGCAGTAGTGGTGGTCC AGACTTCGGTGGTGGTTATCGAGAGCAAGGCGAAGAAACAGATGATGGCGGTGATCAACAAGCTGATGTGGATCGCCTGCGTTCTGATCTCGGTGGCATT CCTCGCGCTTTCGTTCGTGGTCGTCGGCGAGAAGGAGAAGTGGCTGGCGATTAGTGTGACGATTATTGGTACGCTAATAATGGTTACGACTTTGGGGACA ATGTGTTACTGGGTGATACGACATCGGATTGAAGCTTCCAAACTGAGGAGTAGTTTACGGAGGAATTCGCTTGGGAGTCGGTCTAGATCGTTCACTGCAT CGGCGATTTCTGATTCCGAGATTCTTACCAACGAGTACAAAAAAATGTACGCCATATAG
AA sequence Show only first row Show all	>Lus10005432 pacid=23182244 polypeptide=Lus10005432 locus=Lus10005432.g ID=Lus10005432.BGIv1.0 annot-version=v1.0 MDETPTSSSPAMQHTPAPRKKIAKQLTGKKGDTSLHSAARSGNMEAVVEILAGMSDEEEELRVTLEKQNQSGETPLYVAAEYGYVDLVREMIKYCDLADA GIKAKNGFDAFHIAAKQADIDVLRVLMEAYPELAMTVDLSNTTALHTAAMQGHIKIVNFLLEAAGSSLATIARSNGKTALHSVARNGHVEVTRALVTAEP GIATRTDKKGQTALHMAVKGQKIDVVEELIRASPETLNLLDNKGNTPLHIASRKGRAQIVKLLLQHKATDIKAINRTSETALDTAEKMGQHEVKAILQEF GVQSAQALNAKPLNPAKELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYADDPGTIRPGQT LGEANIAQGGAPFIVFFLFDSVALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWIACVLISVAFLALSFVVVGEKEKWLAISVTIIGTLIMVTTLGT MCYWVIRHRIEASKLRSSLRRNSLGSRSRSFTASAISDSEILTNEYKKMYAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	0	1
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	1.0	0.8461
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	1.4	0.8400
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	5.7	0.7591
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	6.3	0.7809
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	8.3	0.7508
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	8.7	0.8157
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	9.0	0.7358
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	11.1	0.8235
AT5G49100			unknown protein		Lus10006504 [exp]	13.0	0.7655
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	15.2	0.7697

Compare expression of checked genes

Lus10005432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.