Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46200 334 / 4e-115 ATNUDT9 nudix hydrolase homolog 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015223 [exp] 559 / 0 AT3G46200 353 / 7e-122 nudix hydrolase homolog 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026700 [exp] 372 / 2e-130 AT3G46200 411 / 2e-145 nudix hydrolase homolog 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10005433 pacid=23182213 polypeptide=Lus10005433 locus=Lus10005433.g ID=Lus10005433.BGIv1.0 annot-version=v1.0 ATGGAGCCACCGCCGGAATACAAGCTTCTCCTCTCTTGCCCTTCTGGGCTCTTGCCTTCTCAGCTGTCCGTGGTTTTCGATCGATCGTACGACAGAGTCG CGCTTCCCAACAGTGAATTGGAGGATTCCGTTGCTCAGATATGGGAGGAAAGAATTAAGAGAAATTCATCGTTATACAACGGGAAGAAATTTCGGTATGG AGGATTTAGTCTTCCGGATGGTGGTGCAGCCGGTGGTGGCGTTTCTCATGCGTGCCTCCACCTAGGATTGACAGATTATCGGACTTTTATTGGGACGAAC TTAAATCCTTTGTGGGAAAATTTCCTTGCACCATCTGAAGTGTTGCTCACTGTAGATGATGTTATACTGTGTCAACACACTGCGAGTCCACTCGGGAATG GCGCGATTGTAGTAACCTCCGATAATGAAATCGTTGTGTTGAGAAGAAGTGAAAATGTTGGAGATTTTCCTGGTTACTTTGTTTTCCCTGGAGGTCATCC CGAGCCTGGGCAAATTGAAGCCACATCTGCTACAGACGTGATAAGGAATGAGGATTTGAACAAGAAGGTATCCGAGGAGATGTTCGACAGTATTTCTCGT GAAGTTGTTGAAGAAATCGGAGTTCCTGCAACATCTCTCTCAAGTCCAGTTTTTATAGGTCTCTCCCGCAGGATCCTGAACGTAAGACCAGCTGCATTTT TCTTCATGAAATGCAGCCTGCCATCCAAGGAAATCCATCAACTCTACTCCTACGCGCTAGACGGCTTCGAGTCAATCCAACTTCACACCGTCTCATTGAT GGTGTTAGAACACATGAAAGATAAAATGCCGGGCTGTCACCAAGGCGGATTCGAGCTTTATAAGCTGATGTTAGACGCTTCATGTAATGCATAG
AA sequence Show only first row Show all	>Lus10005433 pacid=23182213 polypeptide=Lus10005433 locus=Lus10005433.g ID=Lus10005433.BGIv1.0 annot-version=v1.0 MEPPPEYKLLLSCPSGLLPSQLSVVFDRSYDRVALPNSELEDSVAQIWEERIKRNSSLYNGKKFRYGGFSLPDGGAAGGGVSHACLHLGLTDYRTFIGTN LNPLWENFLAPSEVLLTVDDVILCQHTASPLGNGAIVVTSDNEIVVLRRSENVGDFPGYFVFPGGHPEPGQIEATSATDVIRNEDLNKKVSEEMFDSISR EVVEEIGVPATSLSSPVFIGLSRRILNVRPAAFFFMKCSLPSKEIHQLYSYALDGFESIQLHTVSLMVLEHMKDKMPGCHQGGFELYKLMLDASCNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	0	1
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	2.0	0.8850
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	2.2	0.8923
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	3.5	0.8499
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	4.5	0.8576
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	5.9	0.8543
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	6.5	0.8413
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	8.5	0.8413
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	8.9	0.8388
AT5G54300			Protein of unknown function (D...		Lus10018444 [exp]	10.7	0.7745
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10037384 [exp]	11.6	0.8229

Compare expression of checked genes

Lus10005433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.