Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28630 658 / 0 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 626 / 0 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT5G04530 511 / 2e-179 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G01120 357 / 2e-118 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G25450 345 / 8e-114 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G46720 341 / 6e-113 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT2G26640 342 / 1e-112 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G68530 338 / 3e-111 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34250 332 / 6e-109 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT1G04220 333 / 9e-109 KCS2 3-ketoacyl-CoA synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015222 [exp] 919 / 0 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10004918 [exp] 599 / 0 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040873 [exp] 598 / 0 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040333 [exp] 503 / 5e-176 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 503 / 5e-176 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 451 / 8e-156 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 451 / 3e-154 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 424 / 6e-145 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 426 / 3e-142 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026800 [exp] 707 / 0 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 693 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G212600 [exp] 525 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 507 / 6e-178 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 481 / 8e-168 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 463 / 4e-161 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 427 / 3e-147 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 354 / 3e-117 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 343 / 5e-113 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.010G125300 [exp] 342 / 1e-112 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10005434 pacid=23182211 polypeptide=Lus10005434 locus=Lus10005434.g ID=Lus10005434.BGIv1.0 annot-version=v1.0 ATGGTGATCTCTGGCTTCCTAATCCTCTACCCACTCATCACCCTATGGAAATGGTTCGACCGGAAACTTAACCAGCACTGTTACATCCTCGACTACGAGT GCTACAAGCCTTCCTCTTACCGGAAACTCAACACCGAGTTCTCCGGTCAGATCATTAAGCGCAACGCCAATTTGGGGCTCGAAGAATACAAGTTCCTCCT CCGAGCAATCGTCAGCTCCGGCATCGGTGAGGAGACCTACGGCCCTCGAGTCGTGTTCGAGGGCCGTGAGGAGAGTCCGTCTTTACAGGACGGACTCTCT GAACAGGACGAGTTCTTCCACGACACCATCGACAGACTCCTGACTCGCTCGGGGATCTCCCCGAGCGAGATCGACATCCTGGTTGTGAACGTCTCGATGA TCACCTCGCAACCTTCGCTTTGTTCGCGAATCATCAACCACTACAAGATGAGGGAAGACGTCAAGTCTTTTAACCTCACCGGAATGGGATGCTCCGCAAG CTTAATCTCCACCGGCATTGTGTCTAACACCTTGCGTGCGTACCCGAACAAAATCGCGCTGGTCGTCACTTCCGAATCTCTTTCCCCGAATTGGTACTCC GGGAACGACAAGTCGATGATCTTAGCGAATTGCCTGTTCAGATCCGGTGGTGCCGCGATCTTGATGACGAACAAACGCTCGTTAAAAGAGAGAGCTCTGT TCAAAATGAAAACTCTGGTTCGCACTCACCATGGCGCCAAGGACGAATCGTACGGATGCTGCACACAGAAGGAAGACGATCATGGCCGTCCGGGATTCTA CTTGTCGAAATCACTTCCGAAAGTCGCGACTAGAGCCTTCGTCGAGAATCTAAGGGAGATTGCCCCGAAGATCCTTCCGACCAGGGAGCTTCTACGGTTT ATGGTTCTCTATTCTATCAGGAAACTGACTACGGCGATGAAGAATCGGAAATCGGCGGCGGCGACGCCGCCACCGGTGATAAACTTCAAAACAGGGGTGG AGCATTTCTGCATACATACAGGGGGGAAAGCGGTGATCGACGGGATAGGGAAGAGTTTGGAGCTGAGCGAGTACGATTTGGAGCCGGCGAGGATGACACT GCACCGGTGGGGGAACACGTCGGCGAGCAGCTTGTGGTATGTGCTGGCGTACATGGCGGCAAAGCGGCGGTTGAAGAGAGGGGATCGGGTCCTGATGATT AGTTTCGGGGCAGGGTTCAAGTGTAACAGCTGTTTGTGGGAGGTGGTCAGGGACTTGGAACCCGGTGGATCCGACGGTGTCGGAGGAGGGATCGGAGGTC CGACGGTGTGGGACGATTGCATTGAAAGCTATCCGCCAGAGACGTTGGCCAACCCATTCATGACCAAGTACGGATGGCTTGCAAACGAGGATCCCGCCAC TTTTGTTATGCCCGATTCACTTTCACTGCGTCAGGGTAAAAAAATTGAAGATTCACCACAGTAA
AA sequence Show only first row Show all	>Lus10005434 pacid=23182211 polypeptide=Lus10005434 locus=Lus10005434.g ID=Lus10005434.BGIv1.0 annot-version=v1.0 MVISGFLILYPLITLWKWFDRKLNQHCYILDYECYKPSSYRKLNTEFSGQIIKRNANLGLEEYKFLLRAIVSSGIGEETYGPRVVFEGREESPSLQDGLS EQDEFFHDTIDRLLTRSGISPSEIDILVVNVSMITSQPSLCSRIINHYKMREDVKSFNLTGMGCSASLISTGIVSNTLRAYPNKIALVVTSESLSPNWYS GNDKSMILANCLFRSGGAAILMTNKRSLKERALFKMKTLVRTHHGAKDESYGCCTQKEDDHGRPGFYLSKSLPKVATRAFVENLREIAPKILPTRELLRF MVLYSIRKLTTAMKNRKSAAATPPPVINFKTGVEHFCIHTGGKAVIDGIGKSLELSEYDLEPARMTLHRWGNTSASSLWYVLAYMAAKRRLKRGDRVLMI SFGAGFKCNSCLWEVVRDLEPGGSDGVGGGIGGPTVWDDCIESYPPETLANPFMTKYGWLANEDPATFVMPDSLSLRQGKKIEDSPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10005434 [exp]	0	1
AT2G44220			Protein of Unknown Function (D...		Lus10036985 [exp]	16.2	0.6575
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10006602 [exp]	23.5	0.6231
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	29.9	0.6427
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	59.9	0.5984
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	60.2	0.6052
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	67.0	0.6135
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	135.6	0.5470
AT3G54880			unknown protein		Lus10038690 [exp]	203.9	0.5051
					Lus10002746 [exp]	217.3	0.5288

Compare expression of checked genes

Lus10005434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.