Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005436 [exp] 91 / 7e-21 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 86 / 3e-19 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040872 [exp] 46 / 8e-06 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 44 / 5e-05 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234600 [exp] 40 / 0.0009 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005435 pacid=23182251 polypeptide=Lus10005435 locus=Lus10005435.g ID=Lus10005435.BGIv1.0 annot-version=v1.0 ATGCATGCATCTACACCGTCGATCAAGACATGGTTTGATCTGGTACGTCTACTCACACAGACTATGACACGCGACATACAGATTTGGGATCAGGTGAGAA AATCCATGTATGACAGGTATACTTCACTCGCCCACCACCATTGGAGCATTGAGCATACAATGCTTCTTCGATTACAACAGGTGCCTCACGAGGTTTGGAC CAAACGATCGAAGCCTCTCTGCCGCTTTCTTATCCAAACAACTATGAGATCGCATTTCTTCAAATCCCCGTCTCCGCTCCACTCGTCGGCGGCATCTCCG CCACGCCGGCACCACCCCTTCTCCGATACTATGATAGAGGAGAACATCGACAACGCCGAGTCGCTCATCTCCAGTTTGGAGGAGCCTGCTTCTTCATCCT CTGTCACGACTTCTATGTTCTCTCATGATCGAAACGAGGTGAAGAGGTACATCTCCGCCATTAAGGATCTTGAGGCCGCTATGCAATACTACGTCTCGAG GAATATTTTGCTAGTAAAGGAGAGCTTGCAGCATCATATCTATTGTTATGAACGTGCTATAATGAACACGTTACAACTCTCAATCCATATTTTGGACAAG AAAATAAAGACAGTGTTATCATTCATGAAATAA
AA sequence Show only first row Show all	>Lus10005435 pacid=23182251 polypeptide=Lus10005435 locus=Lus10005435.g ID=Lus10005435.BGIv1.0 annot-version=v1.0 MHASTPSIKTWFDLVRLLTQTMTRDIQIWDQVRKSMYDRYTSLAHHHWSIEHTMLLRLQQVPHEVWTKRSKPLCRFLIQTTMRSHFFKSPSPLHSSAASP PRRHHPFSDTMIEENIDNAESLISSLEEPASSSSVTTSMFSHDRNEVKRYISAIKDLEAAMQYYVSRNILLVKESLQHHIYCYERAIMNTLQLSIHILDK KIKTVLSFMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	0	1
					Lus10020461 [exp]	2.0	0.8926
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	2.0	0.8671
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	2.0	0.8924
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	2.4	0.8832
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	2.8	0.8579
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	3.5	0.8625
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10011114 [exp]	4.8	0.8180
AT5G41720			unknown protein		Lus10006473 [exp]	5.0	0.8631
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	5.3	0.8333
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	6.3	0.8484

Compare expression of checked genes

Lus10005435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.