Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55150 479 / 6e-162 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT3G09520 452 / 6e-152 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT2G28640 447 / 5e-150 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT5G59730 425 / 3e-141 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G39380 416 / 1e-137 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT1G07725 414 / 4e-137 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT3G09530 357 / 1e-114 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28650 353 / 5e-114 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT1G72470 297 / 6e-92 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 294 / 9e-91 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015221 [exp] 977 / 0 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040872 [exp] 721 / 0 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 717 / 0 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10025291 [exp] 462 / 4e-155 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040329 [exp] 438 / 4e-146 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10024438 [exp] 432 / 1e-143 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10023452 [exp] 388 / 5e-127 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 382 / 4e-125 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 384 / 5e-125 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234600 [exp] 557 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 550 / 0 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.006G214300 [exp] 505 / 2e-172 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.010G212400 [exp] 496 / 7e-169 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 443 / 3e-148 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G166400 [exp] 306 / 2e-95 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 303 / 3e-94 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 295 / 1e-90 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 293 / 6e-90 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 263 / 5e-79 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10005436 pacid=23182205 polypeptide=Lus10005436 locus=Lus10005436.g ID=Lus10005436.BGIv1.0 annot-version=v1.0 ATGAGATCGCATTTCTTCAAATCGCCGTCGCCGTCTCCGCTCCACTCGCCGGCGGCATCTCCGCCACGCCGGCACCACCCCTTCTCCGAGACTATGATGG AGGAGAACATCGACAACGCCGAGTCGCTCATCTCCAGTTGGGAGGAGCCTGCTTCTTCATCCTCTGTCGTGACTCCTCTGTTCTCTCATGATCGAAACGA GGCCAAGAGGTACATCTCCGCCGTTAAGGATCTTCAGGCCGCTATGCAGTACTACGTCTCGAGGAATATTCCGGCATCGGAGAATTTGGTTCGAGCTCAG AGCCTGATGCAGAAGGCGATGAAGAGACTCGAGAAGGAGTTCTACTTGATTCTCAGGTCGAATCGGGAGCAGCTTGATGCTGAATTAGTCTCCGTCCGTA GTGGATCAGTTGTTGTTGCTAGATCTAGATCATCGGATCGGTCCTATGATCGGGCGTTGACGCTTTCGGATCTCGGTGATGGCGAGGTAACTGACGGAGA TGGAGATGAGACTGTGTTATCTGAGGTTGAGGAAGAGGCGATGGTTGTTATGTCTGATCTGAAAGCTATTGCTGACTGTATGATTGGAGCTGGATATACA AAGGAGTGCGTTAAGATTTACCAGATCATTCGGAAATCAATCGTCGACGAAGGCCTGTACCGCCTGGGAGTCGACAGATTCAGTCTGTTACAGATCCACA AGCTCGATTCGGATGTGGTGGAGTCAAAGATCAAGACTTGGTTGTACGCCGTGAAGATCGCCGTGAAGACTCTGTTCAACGGAGAGAGGCTGCTATGTGA CCACGTTTTCTCGTCCTCTGCGGCGATCAGGGAGTCCTGCTTCGTTGAGATCGTTCGAGAAGGCGCTCTCGACATGTTTGGATTCCCGGAGAACATCGCC AAGGGGAAGAAAACTCTCGAGAAAATGTTCCTCACTCTTGACATCTACGAGGCGATCTCGGATCTATGGCCGGAGATCGAATCCATTTTTGAATTTGAAT CCACCTCTTTGGTCAGAAATCGAGCGGTGAATTCTCTAATCAAGCTTGGGGAGGCAGTGAGGACGATGCTATCCGATCTGGAAATGTCGATTACGAAGGA TAGCTCGAAGTTGTCTGTTCCGGGAGGCGGAGTTCATCCTCTTACTCGTTACGTCATGAACTACATCTCCTTACTCAGCGACTACTCCGGCGTACTCTCA GATATAGTAGCGGATTATCCTTTGGAGTTTTCGTCACCTTTACCGGAGACTTACTTCCACAGTCCTACCACCGACGACGATGGCAGGACGTCTCCAATTT CTGCTCGATTTGCGTGGCTGATCCTCGTCCTCCTCTGTAAAATCGACGTCAAGTCTCAATCATACAAGGACGTCGCGCTCTGCTACTTATTCTTAGCGAA CAATCTCAACTACGTTGTGAACAAGGTCCGATCATCGAGCTTGAAATTCCACCTTGGCGAAGAATGGATCGAGAAGCACGAATCCAAGGTGAAGCAGTAC GCAACCAATTACGAGCGCGTGGGGTGGGACAAAGTGATCATGTCGCTTAAGACCACCACGGATGCGATGACGGTTCACGAAGCTGCGGAGTGTTTCAGGA AATTCAACATGGCGTTCGAGGAGACGTACAAGAAGCAGTCGGCGTGGGTGGTGCCGCACTCGAGGCTCAGAGACGATATCAAGATATCGGTGGCGAGGAA GATTGGACCGGCATACCGTAATTTGTACGAGAGGTACAGGACGACGGTGGCCAGAGAGTTCGGGAGGGGTGGAAGTGTCAGATATGCCCCTGACGATTTG AACAACTACTTGTCGGATTTGTTCTACGGGGTATCGTCCGGGAGTGACGCAGGGAGTAGCGTTTCATCCAGCTCTTCAAGCCGGTCGTCCGTCTCTTCTG GTGGCCGTGGCGGTGGGTCCGGTCGGTAA
AA sequence Show only first row Show all	>Lus10005436 pacid=23182205 polypeptide=Lus10005436 locus=Lus10005436.g ID=Lus10005436.BGIv1.0 annot-version=v1.0 MRSHFFKSPSPSPLHSPAASPPRRHHPFSETMMEENIDNAESLISSWEEPASSSSVVTPLFSHDRNEAKRYISAVKDLQAAMQYYVSRNIPASENLVRAQ SLMQKAMKRLEKEFYLILRSNREQLDAELVSVRSGSVVVARSRSSDRSYDRALTLSDLGDGEVTDGDGDETVLSEVEEEAMVVMSDLKAIADCMIGAGYT KECVKIYQIIRKSIVDEGLYRLGVDRFSLLQIHKLDSDVVESKIKTWLYAVKIAVKTLFNGERLLCDHVFSSSAAIRESCFVEIVREGALDMFGFPENIA KGKKTLEKMFLTLDIYEAISDLWPEIESIFEFESTSLVRNRAVNSLIKLGEAVRTMLSDLEMSITKDSSKLSVPGGGVHPLTRYVMNYISLLSDYSGVLS DIVADYPLEFSSPLPETYFHSPTTDDDGRTSPISARFAWLILVLLCKIDVKSQSYKDVALCYLFLANNLNYVVNKVRSSSLKFHLGEEWIEKHESKVKQY ATNYERVGWDKVIMSLKTTTDAMTVHEAAECFRKFNMAFEETYKKQSAWVVPHSRLRDDIKISVARKIGPAYRNLYERYRTTVAREFGRGGSVRYAPDDL NNYLSDLFYGVSSGSDAGSSVSSSSSSRSSVSSGGRGGGSGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	0	1
AT1G32920			unknown protein		Lus10001526 [exp]	1.0	0.9304
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	2.0	0.8924
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	3.0	0.8920
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	3.0	0.8550
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.7	0.8697
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	4.2	0.8775
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002301 [exp]	4.4	0.8213
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10004752 [exp]	4.7	0.8544
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	5.0	0.8837
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	7.2	0.8917

Compare expression of checked genes

Lus10005436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.