Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07745 231 / 1e-73 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015220 [exp] 421 / 7e-148 AT1G07745 273 / 6e-91 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10037642 [exp] 141 / 5e-41 AT1G07745 108 / 1e-29 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10025465 [exp] 104 / 3e-27 AT1G07745 56 / 4e-10 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10023341 [exp] 52 / 4e-07 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 51 / 9e-07 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093100 [exp] 51 / 4e-07 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10005437 pacid=23182229 polypeptide=Lus10005437 locus=Lus10005437.g ID=Lus10005437.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTGGAATCCCTGGAAGGGCAGCATCATCAATCATGGTTAGACGGCGTTGAGCTTCTGCGAGATGCAACCGTTAACAAATGGATTCTGTCAA CTGGACTCGCTGGATTGGATTCGTTTCTTCACGGTGGGTTGTGGGTTGGTCAATTGACCGAATTGGTTGGCCAATCGTCTTCTGGAAAAACTCAAGTAAG CAATTTTGAAGATGCTGATTTGCATATTCAGAAACACTTACTGGTATTAAAAGTTAAAACTAGGGCTGCTGATGAGCCAAGCAGCTCGGCTTTTGGCCAG AGAAACACTCGGTTTGCTTCAAGTGTTGCCAAGATAAACAGGAGGAGTAGTGTTGTGTATATAGACACAGGAAACTCCTTTTCGAGCAGACGAATCGAGC AGTTTGTTCGCAAGAACCAGGAAAGAACAGACATTGTTCAAAGTGTAATGAGCAGAATATCGTGTCACTCGGTTTTTGACATATTTTCGCTGTTCGATAC ACTACACCAGTTCGAGTTCAAATTGAGATCATCCCAGGAAAGCAGGGAAGAACAAGATTGTGTTGCGAGTTGGTTACTCATAATCGATTCCGTCTCCTCG CTGATCACCCCTATACTCGGAGGAAGCAGCTCCCAGGGACATCCTTTGATGACATCGCTGGGTTTCTTGCTGAAGAAGTTAGCACACAAGCACAACATTG CAGTACTGGTGACGGACCATATGGTAGGCGGAGAAGGCAGGAGTCTGAAACCTGCTTTGGGAGAGAGTTGGAAAAGCATTCCACATATGAGGCTGCTGAT CTCTCGTAGCCATGGAAGCAATGCTTGCTGCAATGTTTCCATTCTGAAACACCCTTCACTGTGGGTCACCATCAACTCAGACGGTCTCCACTCTAGAAAC CTTGGTATGATCCGTGATGGTTCATGGCATTGCCTGGCTACATTCTCTAAGAACCTTGGTTCGTTGCTCGATCACCAGAGCAGCATTGATCATAAGAGAC GTGTCGAGATTCCAGCTGGTTTCGGAACCTGGAGCCACCGCAAAGTTCGACTCCAGCTCGAACTTAAACGTACAGTACTCCTCAGTCTTCAACTAAATAC CGACGTTGCACCTCACGACGAGTTGCTTCAACTCCGAACAGCTGAGTAG
AA sequence Show only first row Show all	>Lus10005437 pacid=23182229 polypeptide=Lus10005437 locus=Lus10005437.g ID=Lus10005437.BGIv1.0 annot-version=v1.0 MAAVESLEGQHHQSWLDGVELLRDATVNKWILSTGLAGLDSFLHGGLWVGQLTELVGQSSSGKTQVSNFEDADLHIQKHLLVLKVKTRAADEPSSSAFGQ RNTRFASSVAKINRRSSVVYIDTGNSFSSRRIEQFVRKNQERTDIVQSVMSRISCHSVFDIFSLFDTLHQFEFKLRSSQESREEQDCVASWLLIIDSVSS LITPILGGSSSQGHPLMTSLGFLLKKLAHKHNIAVLVTDHMVGGEGRSLKPALGESWKSIPHMRLLISRSHGSNACCNVSILKHPSLWVTINSDGLHSRN LGMIRDGSWHCLATFSKNLGSLLDHQSSIDHKRRVEIPAGFGTWSHRKVRLQLELKRTVLLSLQLNTDVAPHDELLQLRTAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	0	1
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	1.4	0.9378
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	1.7	0.9360
					Lus10014678 [exp]	1.7	0.9454
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	3.9	0.9201
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	4.2	0.8980
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	4.4	0.8879
AT4G37020			unknown protein		Lus10000435 [exp]	5.3	0.8903
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	5.9	0.9113
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	6.2	0.8913
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	7.2	0.9252

Compare expression of checked genes

Lus10005437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.