Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07750 543 / 0 RmlC-like cupins superfamily protein (.1) AT2G28680 542 / 0 RmlC-like cupins superfamily protein (.1) AT1G03890 115 / 4e-28 RmlC-like cupins superfamily protein (.1) AT1G03880 111 / 1e-26 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT5G44120 99 / 3e-22 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT4G28520 77 / 5e-15 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015219 [exp] 686 / 0 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10040867 [exp] 537 / 0 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005880 [exp] 533 / 0 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10011816 [exp] 131 / 1e-33 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 122 / 4e-30 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 120 / 2e-29 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 119 / 4e-29 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 113 / 4e-27 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 113 / 4e-27 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047200 [exp] 569 / 0 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 568 / 0 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G402600 [exp] 308 / 4e-102 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1) Potri.001G308050 [exp] 127 / 3e-32 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 127 / 5e-32 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 126 / 1e-31 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 125 / 2e-31 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 125 / 2e-31 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 124 / 4e-31 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 114 / 2e-27 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10005438 pacid=23182204 polypeptide=Lus10005438 locus=Lus10005438.g ID=Lus10005438.BGIv1.0 annot-version=v1.0 ATGGCTTCCAACGACGTCGTCCTGTTTTCTACCTCCGTCGCAATTGTCATCGTCGGCTTGATTGCGGCCACCGGCGAGTCAGTAATGAAATCTCAAGAAT TCCATAAGTGTGGATTCGCTATTCCGACGACCAAAGTTGAGCCACACAATTTGGCTGACCAGAGTACCGGAGAAGAGTATCATCATCACACTATGGATAT CGATCTGACCCCAAAGCTCCCCAAGAATGCCTATGGAGGCAACGGCGGCTCCTACCACGCCTGGTGCCCCAACGATCTCGGCATGCTCCGTCAAGGAAAC ATCGGCGCCGCCAAGCTCGGCCTCGAGAAGAACGGCCTGGCCCTCCCTCGTTACTCCGACTCCGCTAAGGTCGCCTACGTTCTTCAAGGCAACGGTGTGG CCGGAATCGTGCTACCGGAGAAGGACGAGAAGGTGATCGCAATCCGTAAGGGAGACGCAATCGCCTTACCGTTCGGCTGCGTAACCTGGTGGTACAACAA AGAAGACACCGAGCTAGTGGTCCTCTTCTTAGGCGACACCTCAAAGGGACACGTGGCAGGTTCCTTCACAGACTTCTTCCTCACAGGCTCAAACGGAATC TTCACCGGCTTCTCCCCTGAGTTCGTCTCCCGAGCATGGGACCTCGACGAGGCCGCTGTCAAGTCCATGGTATCATCCCAATCCGCCAAGGGAATCGTCA AGCTCGACGGCTCCGTCAAACTCCCCGAACCAAAGACATCAAACCGCGACGGCGTTGTCTACAACTGCGAGGAAGCTCCCCTCGACGTCGACATCAAGAA CGGCGGGAGGGTCGTGGTGCTGAACACCAAGAACCTGCCGTTGGTCGGTGAGGTCGGGTTGGGAGCGGATCTTGTGAAGCTCGACGGAAACGCCATGTGC TCCCCTGGTTTCTCCGTTGACTCTGCCTTGCAGGTGACTTACATTGTGAGTGGAAGCGGTAGGGTTCAGGTTGTTGGTGTTGACGGGAAGAGGGTGTTGG ATACTACTGTGAAGGCTGGCCAGTTGTTCATCGTGCCGAGGTTCTTCGTTGTTTCGAAGATCTGTGATCCTGATGGCATGTCCTGGTTCTCCATCATCAC CACCCCTGACCCGAAGTTCAGTCACTTGGCAGGGAAGACATCGGTGTGGAAGGCACTGTCGCCGACGGTGCTGCAGGCAGCGTTCAACGTGTCGGCGGAT GCTGAGCAGAAGTTCAGGAAGACTAGGACTTCCGATGAGATTTTCTTCCCACCGTCGAAATGA
AA sequence Show only first row Show all	>Lus10005438 pacid=23182204 polypeptide=Lus10005438 locus=Lus10005438.g ID=Lus10005438.BGIv1.0 annot-version=v1.0 MASNDVVLFSTSVAIVIVGLIAATGESVMKSQEFHKCGFAIPTTKVEPHNLADQSTGEEYHHHTMDIDLTPKLPKNAYGGNGGSYHAWCPNDLGMLRQGN IGAAKLGLEKNGLALPRYSDSAKVAYVLQGNGVAGIVLPEKDEKVIAIRKGDAIALPFGCVTWWYNKEDTELVVLFLGDTSKGHVAGSFTDFFLTGSNGI FTGFSPEFVSRAWDLDEAAVKSMVSSQSAKGIVKLDGSVKLPEPKTSNRDGVVYNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVKLDGNAMC SPGFSVDSALQVTYIVSGSGRVQVVGVDGKRVLDTTVKAGQLFIVPRFFVVSKICDPDGMSWFSIITTPDPKFSHLAGKTSVWKALSPTVLQAAFNVSAD AEQKFRKTRTSDEIFFPPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07750			RmlC-like cupins superfamily p...		Lus10005438 [exp]	0	1
AT2G36220			unknown protein		Lus10022709 [exp]	3.9	0.7874
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	18.4	0.7297
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	18.7	0.7409
AT1G04560			AWPM-19-like family protein (....		Lus10014456 [exp]	23.7	0.7733
AT4G33640			unknown protein		Lus10020463 [exp]	30.0	0.7385
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10025808 [exp]	32.6	0.7555
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	33.3	0.7046
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10006632 [exp]	36.4	0.7197
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10042160 [exp]	37.1	0.7505
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	46.2	0.7419

Compare expression of checked genes

Lus10005438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.