Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 345 / 3e-115 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 321 / 5e-106 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 315 / 5e-104 HXXXD-type acyl-transferase family protein (.1) AT5G48930 217 / 7e-66 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G03390 201 / 2e-59 HXXXD-type acyl-transferase family protein (.1) AT2G19070 194 / 5e-57 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G27620 172 / 1e-48 HXXXD-type acyl-transferase family protein (.1) AT1G65450 169 / 1e-47 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G57840 152 / 4e-41 HXXXD-type acyl-transferase family protein (.1) AT1G28680 150 / 1e-40 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005440 [exp] 347 / 1e-118 AT5G41040 206 / 4e-64 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 352 / 5e-118 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 351 / 8e-118 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 338 / 1e-112 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 333 / 1e-110 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 325 / 1e-107 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 325 / 1e-105 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 318 / 1e-104 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 289 / 1e-93 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 364 / 7e-123 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 342 / 2e-114 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 314 / 1e-103 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 281 / 2e-90 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 226 / 2e-69 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 216 / 2e-65 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 214 / 2e-64 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 212 / 6e-64 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 211 / 3e-63 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G158400 [exp] 202 / 6e-60 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10005439 pacid=23182247 polypeptide=Lus10005439 locus=Lus10005439.g ID=Lus10005439.BGIv1.0 annot-version=v1.0 ATGGGCTTTCAGTTTCAACCAGATGTGAAACGATGCGAGCCAGTCACGGTTCATCCAGCATCAATGCCGGTGGTGCCGGAGGGTAACTACTTCCTCTCGA ACCTCGACCGTATCCCGGTCTTCGTGCAAACCGTGTACTTCTACAGAGCCACAACGGGAGGGCCAGATGGCGATGTTGTGGAAGTGATTAAGGATGCTCT GAGCAAGGTACTTGTTCACTACTATCCCTTAACGGGACGCTTGGCAGTGTCTCCTCAAGGCAAGCTCTCCATAACCTTCGATGGAGATCGTGGTGTGCTG TTTGTCAAGGCCGAGGCTGACTGTTGCTTGGATGATATCGCTGATGACCTCGACCATCCTTCCACCAATGTTGCCGAGAAGATGGTTTACTCTCCTTGCC CTGGTGCCGGTGGCTTCGAAGTTTTTGGTCTACCCATTTTGATGGTTCAGGTGACCAAATTCCAATGCGGAGGATTTGCCTTGGGTATCGTGGTGAACCA CTGCTTGATGGATGCACCCTGTGCTATCGAGTTCGTTAACTCATGGGGTGAAGTATCTAGGGGATTACCGATTTCGGTCCGACCGTATTTCGATCGGACC GTTTTGAAATCCCGTGAACCGCCCCAAATCAAGTTCCCTCACCTCGAGTATGCCACCTTTGAGGATAAGCCGTCACCAACCAAACCCTCTCTCGCGGCCG AGAAATTCATACACAAATTCTTTTGCTTTGATCCCGACACGATAGACCGGATCAAAACAGAAGCATCCTCTCTAAAACACAGGCATCCTTGCACCACTTT TGAAGCTCTGACAGCATTCGTGTGGAAAGCTCGAACCAAGGCTATGGGTATGGCATCCGACCAAATGACGAAATTGCTAGTTCCTGTCGACATAAGAAAC AAGGTGGATCCACCGTTGCCCCATGGGTATTTTGGGAATGCTATTTTTTACGTGGGGGCCACCTGTATGGCCAATAAGGTGGTGGACTGGCCACTATCTT ACTTGGTCGGGCTGATACAGGAAGAGATCGCTGTAACCGATGAGTATGTGAGGTCCGGGATTGATTATTTGGAAGCCACGTGGACCATGCTGACTTCAGA TTACGCGATGGTGGCAACCAAGTGGTCCCGAGGGTTAGATTTCTACAATGCAAATTTCGGGTGGGGACGACCAATTAGTTTTGCGCCGGTCGGGAGTCCG GCTGATCACCCCGTCATTTTCTTGCCCGCCGTCGCAAATAAAAAAAGTGTGAGGCTCTTCGTTACTCTTAAGGCCTCGGCAATGGAAACATTTGAGGGAC TTATTGCTGGAGGAAAAATGTGA
AA sequence Show only first row Show all	>Lus10005439 pacid=23182247 polypeptide=Lus10005439 locus=Lus10005439.g ID=Lus10005439.BGIv1.0 annot-version=v1.0 MGFQFQPDVKRCEPVTVHPASMPVVPEGNYFLSNLDRIPVFVQTVYFYRATTGGPDGDVVEVIKDALSKVLVHYYPLTGRLAVSPQGKLSITFDGDRGVL FVKAEADCCLDDIADDLDHPSTNVAEKMVYSPCPGAGGFEVFGLPILMVQVTKFQCGGFALGIVVNHCLMDAPCAIEFVNSWGEVSRGLPISVRPYFDRT VLKSREPPQIKFPHLEYATFEDKPSPTKPSLAAEKFIHKFFCFDPDTIDRIKTEASSLKHRHPCTTFEALTAFVWKARTKAMGMASDQMTKLLVPVDIRN KVDPPLPHGYFGNAIFYVGATCMANKVVDWPLSYLVGLIQEEIAVTDEYVRSGIDYLEATWTMLTSDYAMVATKWSRGLDFYNANFGWGRPISFAPVGSP ADHPVIFLPAVANKKSVRLFVTLKASAMETFEGLIAGGKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	0	1
					Lus10000984 [exp]	2.8	1.0000
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	4.0	1.0000
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	4.9	1.0000
					Lus10017835 [exp]	5.7	1.0000
					Lus10040014 [exp]	6.3	1.0000
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	6.9	0.9786
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	6.9	1.0000
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	7.5	1.0000
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	8.4	0.9681
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	8.9	1.0000

Compare expression of checked genes

Lus10005439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.