Plant FIBer expression Database

Lus10005440 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41040 202 / 2e-62 HXXXD-type acyl-transferase family protein (.1.2)
AT3G48720 177 / 4e-53 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
AT5G63560 169 / 7e-50 HXXXD-type acyl-transferase family protein (.1)
AT5G48930 114 / 3e-29 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
AT1G03390 111 / 4e-28 HXXXD-type acyl-transferase family protein (.1)
AT1G65450 96 / 2e-22 HXXXD-type acyl-transferase family protein (.1.2.3)
AT2G19070 96 / 3e-22 SHT spermidine hydroxycinnamoyl transferase (.1)
AT1G27620 91 / 1e-20 HXXXD-type acyl-transferase family protein (.1)
AT5G17540 90 / 2e-20 HXXXD-type acyl-transferase family protein (.1)
AT3G03480 84 / 3e-18 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005439
[exp]
346 / 1e-118 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
Lus10032554
[exp]
205 / 1e-63 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Lus10043189
[exp]
204 / 2e-63 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Lus10035189
[exp]
192 / 2e-58 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2)
Lus10032019
[exp]
186 / 3e-56 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Lus10035188
[exp]
178 / 1e-54 AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2)
Lus10012552
[exp]
177 / 9e-53 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Lus10032020
[exp]
179 / 3e-52 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2)
Lus10025523
[exp]
160 / 2e-46 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G100800
[exp]
209 / 5e-65 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Potri.001G326300
[exp]
205 / 1e-63 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Potri.017G068500
[exp]
189 / 6e-58 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Potri.014G166600
[exp]
163 / 2e-47 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2)
Potri.018G105500
[exp]
128 / 2e-34 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Potri.003G183900
[exp]
115 / 2e-29 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Potri.018G104700
[exp]
115 / 2e-29 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Potri.003G019900
[exp]
114 / 6e-29 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1)
Potri.001G042900
[exp]
113 / 8e-29 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Potri.013G074400
[exp]
112 / 2e-28 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0149 CoA-acyltrans PF02458 Transferase Transferase family
Representative CDS sequence
>Lus10005440 pacid=23182249 polypeptide=Lus10005440 locus=Lus10005440.g ID=Lus10005440.BGIv1.0 annot-version=v1.0
ATGATTTACTCTCCTTGCCCGGGTGCCACTGGCTTCCAGGTTTTCGGTCCACCCCTTTTGATGATTCAGGTGACCAAATTCAAATGCGGTGGATTTGCCT
TGGGACTCGTGGCGAACCACTGCCCAATGGACGGAGTTTCGGCTACCGAGTTCGTTAACTCATGGGGCGAAGTATCCAGGGGATTACCTGTCTCGGTCCG
ACCATCTTTTGACCAGACCGTCCTGAAATCCCGCATACCGCCCCAAATCAAGTTCCCGCACATCGAGTATGACACCATGGAGGACAAGTCATCATCATCA
ACCGCTTCCTCCCTCGCGGTGGAGAAATTCGTACACAGATCCTTCTGCTTCGATCCCAACAAGTTATCTCGAATCAAAGCAGAAGCATCCTCTCCGGAAC
ACAGTCATCCTTGCACCACTTTCAAGGCGCCGGCAACATTCGTTTGGAAAGCCCGAACCACGGCTATAGGTATGGCATCAGACCAAAATGACGAAATTGC
TAGTGCCCGTCGACATAAGAAACAAGGTGGACCCACTGTTGCCCGAGGGGTACTTCGGGAACGGTGTTTTCTCATTGGGGCTACGTGTCTGGCGGGGAAA
GTGGTGGACCGACCACTCTCTTACCTCGTCAGACTAATACAAGAAGGGATCGCGGTTACGGATGAGTACGTGAGGTCCGGGATCGATTACGTGGAAGCCA
CGGGGAAAGTGCTGGCTTCGGATTACACGATGATGGCTAGCAAGTGGTCCCGGGGGTTGGTTTCCGAGAAGACGGATTTCGGGTGA
AA sequence
>Lus10005440 pacid=23182249 polypeptide=Lus10005440 locus=Lus10005440.g ID=Lus10005440.BGIv1.0 annot-version=v1.0
MIYSPCPGATGFQVFGPPLLMIQVTKFKCGGFALGLVANHCPMDGVSATEFVNSWGEVSRGLPVSVRPSFDQTVLKSRIPPQIKFPHIEYDTMEDKSSSS
TASSLAVEKFVHRSFCFDPNKLSRIKAEASSPEHSHPCTTFKAPATFVWKARTTAIGMASDQNDEIASARRHKKQGGPTVARGVLRERCFLIGATCLAGK
VVDRPLSYLVRLIQEGIAVTDEYVRSGIDYVEATGKVLASDYTMMASKWSRGLVSEKTDFG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G41040 HXXXD-type acyl-transferase fa... Lus10005440
[exp]
0 1

Lus10005440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.