Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 188 / 8e-62 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 181 / 3e-59 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004942 [exp] 216 / 5e-73 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 211 / 4e-71 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10030325 [exp] 211 / 5e-71 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 211 / 1e-70 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 209 / 3e-70 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10003290 [exp] 208 / 7e-70 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 212 / 1e-65 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10025302 [exp] 89 / 5e-23 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10024430 [exp] 89 / 5e-23 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027000 [exp] 205 / 2e-68 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 203 / 9e-68 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 202 / 1e-67 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 202 / 2e-67 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 201 / 8e-67 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005441 pacid=23182255 polypeptide=Lus10005441 locus=Lus10005441.g ID=Lus10005441.BGIv1.0 annot-version=v1.0 ATGCATCTGGCTTTGGCTTGCTATCAAACCATAAGGGGTAAAGGCAGCCTCCTAAAGGCTAAAGATAGCAAGCCGAAGCCAGATGCCAAGGCACAGGCAG CCAAGGCCGCAAAGGCAGTGAAGTCAGGCCCTACTTTCAAGAAGTCTGCCAAGAAGATCAGGACCAAGGTCACCTTCCATCGACCGAGGACACTGAAGAA GGAGCGAAATCCCAAGTATCCCAGAATCAGTGCACCTCCCAGGAACAAGCTTGACCATTACCAGATTCTGAAGTTCCCTCTGACCACCGAGTCCGCCATG AAGAAGATCGAGGACAACAACACTCTGGTGTTCATTGTCGACATCCGTGCCGACAAGAAGAAGATCAAGGATGCCGTCAAGAAGATGTATGACATCCAAG CAAAGAAAGTCAACACTCTCATCAGGCCGGATGGTACCAAGAAGGCGTACGTTAGGTTGACACCGGACTATGATGCATTGGATGTCGCCAACAAAATCGG CATCATCTAA
AA sequence Show only first row Show all	>Lus10005441 pacid=23182255 polypeptide=Lus10005441 locus=Lus10005441.g ID=Lus10005441.BGIv1.0 annot-version=v1.0 MHLALACYQTIRGKGSLLKAKDSKPKPDAKAQAAKAAKAVKSGPTFKKSAKKIRTKVTFHRPRTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAM KKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	3.0	0.9740
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	4.5	0.9669
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	4.9	0.9703
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	5.5	0.9681
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	7.2	0.9670
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	7.7	0.9636
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	9.2	0.9605
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	9.4	0.9548
AT2G03640			Nuclear transport factor 2 (NT...		Lus10036918 [exp]	11.8	0.9475
AT5G55200		MGE1	mitochondrial GrpE 1, Co-chape...		Lus10010247 [exp]	13.4	0.9385

Compare expression of checked genes

Lus10005441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.