Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59790 266 / 2e-85 Domain of unknown function (DUF966) (.1) AT3G46110 227 / 1e-71 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 155 / 3e-42 Domain of unknown function (DUF966) (.1) AT5G10150 135 / 9e-36 Domain of unknown function (DUF966) (.1) AT1G05577 107 / 9e-26 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004943 [exp] 613 / 0 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 331 / 2e-110 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 233 / 4e-72 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 155 / 2e-42 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 155 / 3e-42 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 135 / 8e-37 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 129 / 3e-34 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 93 / 2e-20 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 89 / 3e-19 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235700 [exp] 295 / 2e-96 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 276 / 5e-89 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 165 / 7e-48 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 152 / 6e-44 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 158 / 5e-43 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 156 / 2e-42 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 135 / 2e-35 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 102 / 2e-23 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 94 / 6e-21 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10005442 pacid=23182226 polypeptide=Lus10005442 locus=Lus10005442.g ID=Lus10005442.BGIv1.0 annot-version=v1.0 ATGGCGGTTAGTTCCAGAGCTAGAAACGCCGAGCAGCCCCGTCTCCCTAGGAAATGGACTACCGACGACCGCGAACCAACTCCCGATCGTCTCAGATCAG CTCCCGTTCACAATCTTAAACTCGCCGCCGGAGACGGAAACGCCGAGAGAAGAGTCGCCGTCGTTTACTACCTCTCTCGCAACGGCCACCTCGAGCATCC TCACTTCATGGAAGTTCCTCTCTCTTCTCCGCAAGGTCTCTACCTCCGAGATGTAATCGGCCGATTGAACTCGCTCCGTGGCAAAGGAATCGCCGCTCTA TACTCCTGGTCTTGCAAACGGAGCTACAGAAACGGTTTCGTCTGGCACGATTTGGCGGAGAGCGATTTCATATATCCAGCGCACGGCAACGAGTACGTCC TCAAAGGATCGGAGCTGCTGGAGCCTTCACTGCCCGCACCGCCGCCTTCGAGGAAATCGTTCGTCGAGTCCAACACTGCTTCGTTCAGATCTATGAAGAA TATTCCGGCTGGAGATCAGAACTCGTCGGAGTCGTCTTCTCCGCCGTCGTGCGACGAGCTGGTTCTTAACTCGAGGCGCATGAATCAATCGTGGAGCTCC AACGATCTTAGCGAGTGCAAGGTCTATAAGGCCGAGTCGTTCTCTAAGTCGAGCCGGAGGACGGCGGCCACTCAGACAGAGGACAAAAGGCGGAGCAGGA GGCCAGTGAAGATGGAGGAGGAAGAGGAGATAGCCGAGATTGTGGAGGAGGTGAACGAGAGAAGGAGGGAAGAGATCTCGATCTCGCCTCCGACATCTGA TTCCAGCCCGGAGACACTGGAGAAGCTGATGGAAGCAGATAGACGGCCGATACTCGGCGGGAACAATTCTAATCCGACGGCGGACGGAGAAGCCGGAAGC AGCGGAGGAAGCGTGCGGACGAAAGCGTCGGCAGTGCTGATGCAGCTGATTTCCTGCGGTTCCAACTCGTTCAGAGACTGTGGGACGGAGGCGTCGAAGG AGCAGAGACTTGCGTTGATTGCGGGACGAGCGCCACGTGTGGTGGGGGCATCGAAGGAATTTCGGAGTACTCCAGTAGGGGTACGAGTGGAGGATAAGGA GTATTTTAGCGGGAGTTTGATCGAGACCAAGAAGGAAGAAGAAGTTCCCGCTCTGAAGAGGTCTAATTCGTACAATGGAGACAGGTTCCAACCAGCTGCT AGTTGA
AA sequence Show only first row Show all	>Lus10005442 pacid=23182226 polypeptide=Lus10005442 locus=Lus10005442.g ID=Lus10005442.BGIv1.0 annot-version=v1.0 MAVSSRARNAEQPRLPRKWTTDDREPTPDRLRSAPVHNLKLAAGDGNAERRVAVVYYLSRNGHLEHPHFMEVPLSSPQGLYLRDVIGRLNSLRGKGIAAL YSWSCKRSYRNGFVWHDLAESDFIYPAHGNEYVLKGSELLEPSLPAPPPSRKSFVESNTASFRSMKNIPAGDQNSSESSSPPSCDELVLNSRRMNQSWSS NDLSECKVYKAESFSKSSRRTAATQTEDKRRSRRPVKMEEEEEIAEIVEEVNERRREEISISPPTSDSSPETLEKLMEADRRPILGGNNSNPTADGEAGS SGGSVRTKASAVLMQLISCGSNSFRDCGTEASKEQRLALIAGRAPRVVGASKEFRSTPVGVRVEDKEYFSGSLIETKKEEEVPALKRSNSYNGDRFQPAA S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59790			Domain of unknown function (DU...		Lus10005442 [exp]	0	1
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	3.5	0.9780
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	3.5	0.9838
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	4.7	0.9831
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	6.3	0.9801
AT5G01660			unknown protein		Lus10018307 [exp]	7.2	0.9802
					Lus10007549 [exp]	7.3	0.9819
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	9.5	0.9766
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	11.2	0.9757
					Lus10002045 [exp]	11.3	0.9761
AT5G66440			unknown protein		Lus10025994 [exp]	13.0	0.9727

Compare expression of checked genes

Lus10005442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.