Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59950 193 / 4e-61 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 179 / 4e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 128 / 1e-35 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT1G66260 124 / 4e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 58 / 1e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G36660 54 / 3e-08 PAB7 poly(A) binding protein 7 (.1) AT2G23350 54 / 3e-08 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G71770 54 / 5e-08 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G37220 52 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22760 51 / 5e-07 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004946 [exp] 308 / 3e-106 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 206 / 3e-66 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10024413 [exp] 192 / 2e-60 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 191 / 3e-60 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10000446 [exp] 144 / 4e-41 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10010982 [exp] 143 / 7e-41 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10023417 [exp] 125 / 1e-34 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040851 [exp] 117 / 1e-30 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040299 [exp] 70 / 1e-13 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093944 [exp] 209 / 1e-67 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 201 / 3e-64 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.017G129900 [exp] 154 / 1e-45 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G087000 [exp] 148 / 2e-43 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.010G208000 [exp] 142 / 2e-41 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.008G052601 [exp] 107 / 8e-29 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 57 / 1e-09 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.014G157300 [exp] 51 / 4e-08 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G141300 [exp] 53 / 5e-08 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 53 / 6e-08 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005445 pacid=23182210 polypeptide=Lus10005445 locus=Lus10005445.g ID=Lus10005445.BGIv1.0 annot-version=v1.0 ATGTCAAGCGCTTTGGATAGGTCGCTCGAAGACATCATCAAAAGCAACAAGAAGCCTGGATCCAGCGGCAGCTCCCCCGGACGCGGCGGCTTCCGAGGAG GAGCTTCCGGTGCTGGAGGTCCAGCTCGTCGTATCCCCGATCGGAGCTTCAATCGCGCCGCACCGTATGGGGCGGTTCACATGGCTCCGGAGATGGCGTG GCAGCATGATATGTTCACTGATCCGGCCATGGCTGCTTTCCAAGCTCAAGCAGTTCAGGCTTCTGCAATTGAGACAGGGACCAAACTCTACATCTCCAAT CTTGATTATGGTGTGACCAATGAAGATGTCAAGGAATTGTTTTCCGAAGTTGGTGATTTGAAACGGTACGCAATACATTACGACCGGAGCGGGAGATCCA AGGGAACTGCGGAAGTGGTATTTTCAAGGAGGGAAGATGGACTTGCAGCGGTGAAGAGATACAACAACGTTCAGCTTGATGGGAAGCCGATGAAGATTGA GATCGTGGGAACCAATATCGTCACAGCCGCCCCTGCTCCTATGCCTCCTATGGTTCTTAACGGGAATTTCGGAAACCCGATTGGATTCAGCAGAGGTGGT GGACAAGGTAGGGGTGCCGGATTTTCTAGGCCACGTGGTGGCCGAGGTGGTGGTGGCCGAGGATTTGGAAGGGGCCGAGGGCGTAGAAACGGAGGCCGTG GAGGAGGTGAAAAGATATCTGCTGAAGATCTCGATGCCGAGTTGGAGAAATATCATTCAGAAGCAATGCAAGAAGAGAGTTGA
AA sequence Show only first row Show all	>Lus10005445 pacid=23182210 polypeptide=Lus10005445 locus=Lus10005445.g ID=Lus10005445.BGIv1.0 annot-version=v1.0 MSSALDRSLEDIIKSNKKPGSSGSSPGRGGFRGGASGAGGPARRIPDRSFNRAAPYGAVHMAPEMAWQHDMFTDPAMAAFQAQAVQASAIETGTKLYISN LDYGVTNEDVKELFSEVGDLKRYAIHYDRSGRSKGTAEVVFSRREDGLAAVKRYNNVQLDGKPMKIEIVGTNIVTAAPAPMPPMVLNGNFGNPIGFSRGG GQGRGAGFSRPRGGRGGGGRGFGRGRGRRNGGRGGGEKISAEDLDAELEKYHSEAMQEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10005445 [exp]	0	1
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10041116 [exp]	7.6	0.8423
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	9.5	0.8840
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	12.7	0.8835
AT4G28230			unknown protein		Lus10031619 [exp]	14.7	0.8624
AT3G25545			unknown protein		Lus10013064 [exp]	20.9	0.8680
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	28.3	0.8674
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	30.3	0.8648
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	32.2	0.8609
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039437 [exp]	35.2	0.8419
					Lus10023559 [exp]	39.2	0.8669

Compare expression of checked genes

Lus10005445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.