Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59960 464 / 8e-164 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004947 [exp] 650 / 0 AT5G59960 464 / 3e-164 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237000 [exp] 511 / 0 AT5G59960 569 / 0.0 unknown protein Potri.009G028500 [exp] 501 / 2e-178 AT5G59960 551 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005446 pacid=23182253 polypeptide=Lus10005446 locus=Lus10005446.g ID=Lus10005446.BGIv1.0 annot-version=v1.0 ATGTCCGCCGGAACTGCTCCTCCTTCAACTCGAAGCTGTTCTTATCTCGATGCTCTCACTCTCGAAATCGAGAAGAAGCTCCAGCGGGCACTAGCTTCTT CGTCTCAGAGAATCAACGTGTTGCAAGAGCTGTTCGCTGACATCGCTTTAGAAGTTGATGAGCGTGCCAAAGATATTATTCTCGGCAGGGAAGAAGACGC GATTTCTCCCGTACGGGACGGCTACAACACTCAGTTGTGCTTTTATAATGTGCTTGCTGATTACTATGTCGAGGCGCCTGAAAGTGGGAAGAGAATTCTT GACTTGATTGTTCTTCTATGGAGCCAGTCATTTGCATCGCATATATTCGCTCTTCTCTTCCACAAATGGTTATTTGATGCTCAACTGGACAGCAATGAAG TGCTTCTACGTTACTCGTCTGCTCTTGTTCAAGGTGCTACTAATGTTTTCTGGATTGACATTCAAACAAACACAAGGCGTTTCCAGACTCTCTTTCATTA CCTCCTTGACGAAGTGGCACTCGAACCGTCACGGTTGAATAAAATTCCAATACAGGCCCAGCGAGACTTGTTTCTCTTACTTTCAAGGTTCATACTATTT TACAACTCAGTCGATAAGCTTCCAAGCTTCTTAGATCAATTCCCAGTCTTTCCAAACGCTTTCTTAGTCGGTGGTCCCGCAGACTTCTTCGTTATCGAAC TTGCAGACCAGATTCAAAAGCTGAAAGTAGAACCAGTCTTGCTACACTACCTCTCAGAAATAAAGGTTCTACAAGGAATGGAACTGAGGATGACCACAAG CACTAGACTAAAGGCGTGCCTATATAGCTTCACTTCGCCCGGAGGCCCAATGTATCCCACGAGAGCCGTCCGTCATGCTGCATGGGACGCTTTGGATTTT CTGTTTCCCGTAAGTTCTCTCCTTCTTAAGTCGGTTTTACGGCATTCGAGATATTCCAGTCTTTCGTACGAATGTTTTGAGTTTTTCGATTGTTGTGTTG CAGGTGGGACAATACCCGAGGCACATAATAAGTCTGTTCTTCAGGCTATTGTATCCGTGGTACTGGCCCTCGTCGTGTTGGAACTTCGTAATCTCTTGCA TAAAGGCGGTATTCTTTTCGTTGCTGAGGCTAGTGTTCTCCAGTTGGGACAAGCTGAATCAAAAGAAGGAACATTGAACACACCAGTCTCGAAGACAAGA ACGACACTTCCGTGA
AA sequence Show only first row Show all	>Lus10005446 pacid=23182253 polypeptide=Lus10005446 locus=Lus10005446.g ID=Lus10005446.BGIv1.0 annot-version=v1.0 MSAGTAPPSTRSCSYLDALTLEIEKKLQRALASSSQRINVLQELFADIALEVDERAKDIILGREEDAISPVRDGYNTQLCFYNVLADYYVEAPESGKRIL DLIVLLWSQSFASHIFALLFHKWLFDAQLDSNEVLLRYSSALVQGATNVFWIDIQTNTRRFQTLFHYLLDEVALEPSRLNKIPIQAQRDLFLLLSRFILF YNSVDKLPSFLDQFPVFPNAFLVGGPADFFVIELADQIQKLKVEPVLLHYLSEIKVLQGMELRMTTSTRLKACLYSFTSPGGPMYPTRAVRHAAWDALDF LFPVSSLLLKSVLRHSRYSSLSYECFEFFDCCVAGGTIPEAHNKSVLQAIVSVVLALVVLELRNLLHKGGILFVAEASVLQLGQAESKEGTLNTPVSKTR TTLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59960			unknown protein		Lus10005446 [exp]	0	1
AT1G27290			unknown protein		Lus10015767 [exp]	2.4	0.8644
AT1G24160			unknown protein		Lus10029213 [exp]	3.5	0.8304
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10017353 [exp]	4.9	0.8495
AT5G59960			unknown protein		Lus10004947 [exp]	6.9	0.8814
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	7.5	0.8542
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	8.9	0.8706
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	10.2	0.8475
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	11.2	0.8433
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	13.4	0.8177
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	13.4	0.8510

Compare expression of checked genes

Lus10005446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.