Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39570 374 / 1e-127 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 300 / 6e-99 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004948 [exp] 632 / 0 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 374 / 2e-127 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 369 / 7e-126 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10023921 [exp] 315 / 2e-104 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10017470 [exp] 314 / 3e-104 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 311 / 5e-103 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 184 / 3e-55 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237100 [exp] 502 / 3e-178 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 384 / 2e-131 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 377 / 1e-128 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G228500 [exp] 321 / 4e-107 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 316 / 4e-105 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 313 / 5e-104 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 308 / 9e-102 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005447 pacid=23182243 polypeptide=Lus10005447 locus=Lus10005447.g ID=Lus10005447.BGIv1.0 annot-version=v1.0 ATGCAGAGCGACGACACCGTAGTGATCGAGAGAGGGAAGAAGCCTGGAGAACCACTCGTCGTCACTGTGAATTGTCCCGATAAGACCGGCCTGGCCTGTG ATATTTGCAGAATCATTCTCCAATTCGGCCTTTACATCGCCAAAGGAGATGTCTCAACTGATGGGAACTGGTGCTACATAGTATTGTTTGTGGTGCCTAA TTCTAGATTAGTTTTAAGATGGACGAGCTTGAAGAATCGTCTTCTATCTGTATGCCCATCATGTTCGATTTCTTTCGTTCTACCGCAGAATTTGGTGATG CATTTGATTCCTTCGTCTCCGGTTTACTTGTTGAAGTTTTTTAGCCTTGACCGGAAAGGATTACTACATGGTAACATACTAATTCTGCTTTGCCTAAGTC CTGCTGTGCACAAAAGAACTGTAACTGTGATTCTAAAGGTTGTGTTATATCTTTCTTTAGATGTTACCACAATTCCTGATGGCAGAGTCCTGGACCTTTT CTTCATTACAGATAATATGGAGCTTTTACACACAAAGAAACGACAAGAAGAGACTTGTGAACAATTGCATGCTGTGTTAGGTGAATCGTGCATCAGCTGT GAACTTCAGCTGGCCGGTGCTGAATACGAATGTCTTCAAGGTCGGACCTCTCTGTGTCAAACCATTGCGAATGAATTGTTCCAACGTGAGATAATAACAG AGAGAGAAGTTCGGTCGCAAGCTCTTAGCTCCAATCTGATTAGATTGAAGAGTGCCAACGTAACATTAGACAACTCACTGAGCCCTGTTCACACCTTGCT TCAAATACACTGCCTTGATCTCAAGGGTCTTCTATATGACGTGATGAGAACATTGAAAGACTGCAATATCCAGGTGGAAATGCTTCATCCACTGCGGGTG ATGATCACAAACCGAGGTCCCGATACCGAACTTCTGGTTGCGAATCCTGTCGAGCCCTCCGGTAACGGAAGACCAATGGTGTTCTACGACGTGACCCTTG CTCTCAAAGCACTTGAGATTTGCATATTCTCTGCCGAAATCGGACGACATTCCGTGGGAGGACGGGAATGGGAGGTGTACAGATTTCTGCTAGACGAGAA GTGCAGATATCGGCTGTGGAGTGAAGCAGCTAGAACTGAGATTGTTGATAGAGTAAGGAGAACTCTGATGGGATTGTCTACCAAGTGA
AA sequence Show only first row Show all	>Lus10005447 pacid=23182243 polypeptide=Lus10005447 locus=Lus10005447.g ID=Lus10005447.BGIv1.0 annot-version=v1.0 MQSDDTVVIERGKKPGEPLVVTVNCPDKTGLACDICRIILQFGLYIAKGDVSTDGNWCYIVLFVVPNSRLVLRWTSLKNRLLSVCPSCSISFVLPQNLVM HLIPSSPVYLLKFFSLDRKGLLHGNILILLCLSPAVHKRTVTVILKVVLYLSLDVTTIPDGRVLDLFFITDNMELLHTKKRQEETCEQLHAVLGESCISC ELQLAGAEYECLQGRTSLCQTIANELFQREIITEREVRSQALSSNLIRLKSANVTLDNSLSPVHTLLQIHCLDLKGLLYDVMRTLKDCNIQVEMLHPLRV MITNRGPDTELLVANPVEPSGNGRPMVFYDVTLALKALEICIFSAEIGRHSVGGREWEVYRFLLDEKCRYRLWSEAARTEIVDRVRRTLMGLSTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10005447 [exp]	0	1
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10004948 [exp]	1.0	0.9030
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	2.4	0.8764
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	5.2	0.8652
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	6.0	0.8149
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	6.6	0.8504
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	11.4	0.8307
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	13.0	0.8208
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	14.1	0.8299
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	14.3	0.8465
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	15.7	0.8236

Compare expression of checked genes

Lus10005447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.