Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46440 635 / 0 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 631 / 0 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G28760 622 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT2G47650 480 / 5e-170 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 478 / 2e-169 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 470 / 3e-166 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G08200 125 / 9e-33 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 122 / 9e-32 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G78570 116 / 1e-28 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 112 / 3e-27 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040847 [exp] 667 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 637 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001707 [exp] 633 / 0 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005900 [exp] 543 / 0 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001705 [exp] 493 / 1e-177 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10003605 [exp] 489 / 3e-173 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 485 / 6e-172 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 465 / 2e-164 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 463 / 2e-163 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G053100 [exp] 639 / 0 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 639 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 633 / 0 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 481 / 1e-170 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 479 / 8e-170 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 476 / 2e-168 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 476 / 2e-168 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.009G150600 [exp] 119 / 2e-30 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.004G189900 [exp] 118 / 4e-30 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.006G272700 [exp] 116 / 2e-28 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10005450 pacid=23182225 polypeptide=Lus10005450 locus=Lus10005450.g ID=Lus10005450.BGIv1.0 annot-version=v1.0 ATGGCGACCGATTCACCAACGAAGCAGCCTCCGCAGCCTTCCCCATTGCGCTCTTCCAAGTTCTGTCAGTCCAATATGAGGATTTTGATCACTGGAGGAG CTGGATTCATTGGGTCGCACCTGGTAGATCGGCTCATGGAAGATGAGAAGAACGAGGTAATTGTTGCTGACAACTATTTCACTGGATCGAAAGATAACCT CAGCAAATGGATTGGCCATCCTAGATTCGAGCTCATCCGTCATGATGTGACAGAGCCATTGCTGATCGAGGTTGATAAGATCTATCATCTAGCTTGTCCT GCTTCTCCCATTTTCTACAAGTACAATCCTGTAAAGACGATAAAAACAAATGTGATCGGTACACTCAACATGCTGGGACTTGCCAAGCGAGTTGGAGCGA GAATTTTGCTTACATCAACTTCAGAGGTGTATGGTGATCCTCTCATCCATCCTCAGCCGGAGACCTACTGGGGCAACGTCAACCCAATTGGTGTCCGAAG CTGCTATGACGAGGGGAAACGCGTGGCCGAGACACTAATGTTTGATTACCATAGGCAACATGGGATAGAAATCCGAATTGCCAGGATCTTCAACACGTAT GGACCCCGCATGAACATCGATGATGGGCGTGTCGTCAGCAACTTCATTGCTCAAGCTCTTCGCGGCGAGCCGTTAACTGTACAGAAACCTGGTACACAAA CTCGCAGCTTCTGCTACGTATCCGACATGGTTGATGGCTTGATCAGGCTGATGGATGGAGAAAACACCGGACCAATCAACATTGGAAACCCAGGAGAGTT TACCATGAGTGAACTTGCCGAAACAGTGAAGGAGCTGATCAATCCAGAGGTGGAGATAAAGATGGTGGAGAACACGCCCGACGATCCAAAGCAGAGAAAG CCAGACATAACAAAGGCTAAAGAACTGTTGGGATGGGAGCCTAAGGTGAAGTTGAGGGAAGGCCTTCCCCTTATGGAACAAGACTTCCGGAGAAGGCTTG GTGTGTCCCACAAGTGA
AA sequence Show only first row Show all	>Lus10005450 pacid=23182225 polypeptide=Lus10005450 locus=Lus10005450.g ID=Lus10005450.BGIv1.0 annot-version=v1.0 MATDSPTKQPPQPSPLRSSKFCQSNMRILITGGAGFIGSHLVDRLMEDEKNEVIVADNYFTGSKDNLSKWIGHPRFELIRHDVTEPLLIEVDKIYHLACP ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMDGENTGPINIGNPGEFTMSELAETVKELINPEVEIKMVENTPDDPKQRK PDITKAKELLGWEPKVKLREGLPLMEQDFRRRLGVSHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	0	1
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	1.4	0.8358
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	1.7	0.8298
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	2.8	0.8349
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	3.0	0.8146
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	4.5	0.8202
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	6.9	0.8190
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	9.9	0.8061
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	12.0	0.7971
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	12.3	0.7861
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	14.1	0.8154

Compare expression of checked genes

Lus10005450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.