Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34820 77 / 2e-16 bHLH bHLH053 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G30670 75 / 5e-16 bHLH bHLH052 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038432 [exp] 82 / 9e-19 AT1G30670 108 / 4e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461000 [exp] 87 / 4e-20 AT1G30670 122 / 5e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G157700 [exp] 84 / 5e-19 AT2G34820 121 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005451 pacid=23182222 polypeptide=Lus10005451 locus=Lus10005451.g ID=Lus10005451.BGIv1.0 annot-version=v1.0 ATGGCTTTGAGCTTCAGTTCACATTTCGACTCCTCCTCCTTCATCTTCCCCGCCGACGACGACTGCCAATTCCCCACCACCGCCGATGACTTCTTCTGGC CGTCGGAAACAGAGTTTCTGTTCCCACCACAGCTCGAATTAGCCGAATCCTTTCCACATCATGATTTCGTATTTCCTGAAGAAGACTCTGTTATCGAATT CGACGGAGGACTAACAATTCCTCCCACCCCTGAATTCATCCACCTCGATGAACTCAATTTCTCTGCTCCTCCTCCATTGCCCGTTTTCCAGCCGCCGGTG GGGGAGTTCAACCTCGGGACGACGAAGAAACAGGGGAACGACTCGTCGGAGCTGTCGGTACAGAGCATTGCGGCGAGGAAGAGGAGGAGGAGGATTTCGG AGAAGACGCAGGAGCTCGGGAAGCTGATTCCCGGTGGGAACAAGATGAACACCGCCGACATGTTTCAAGCTGCTGCTAAGTATGTCAAGTTCTTGCAAGC TCAGCTCGCAGTTCTTCAGCTCACTACCTCCCTTCAGGAGCCGATTGAGATGGAGAAGATTGTGGCGTCGCCTGCGGTACAGAAGAAGCTCTACTCGGAG GGGAAATGCTTGGTTCCAACGGAGCTCCTCCACGCTCTGGCGATCAATGAGTTGCTAGCTGAGAAAGAATAG
AA sequence Show only first row Show all	>Lus10005451 pacid=23182222 polypeptide=Lus10005451 locus=Lus10005451.g ID=Lus10005451.BGIv1.0 annot-version=v1.0 MALSFSSHFDSSSFIFPADDDCQFPTTADDFFWPSETEFLFPPQLELAESFPHHDFVFPEEDSVIEFDGGLTIPPTPEFIHLDELNFSAPPPLPVFQPPV GEFNLGTTKKQGNDSSELSVQSIAARKRRRRISEKTQELGKLIPGGNKMNTADMFQAAAKYVKFLQAQLAVLQLTTSLQEPIEMEKIVASPAVQKKLYSE GKCLVPTELLHALAINELLAEKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	0	1
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	1.0	0.9945
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	1.4	0.9735
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	5.5	0.9016
AT1G68780			RNI-like superfamily protein (...		Lus10038948 [exp]	6.5	0.8752
					Lus10033149 [exp]	6.7	0.9226
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	6.9	0.8901
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	7.7	0.9226
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	8.7	0.9226
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	9.5	0.9226
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	10.2	0.9226

Compare expression of checked genes

Lus10005451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.