Plant FIBer expression Database

Lus10005452 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46450 380 / 1e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004953
[exp]
545 / 0 AT3G46450 358 / 4e-120 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Lus10040845
[exp]
514 / 4e-180 AT3G46450 453 / 3e-156 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Lus10016575
[exp]
273 / 4e-86 AT3G46450 242 / 1e-74 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Lus10004952
[exp]
103 / 9e-27 AT3G46450 46 / 1e-07 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G028700
[exp]
466 / 1e-161 AT3G46450 472 / 4e-164 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Potri.001G237400
[exp]
438 / 2e-150 AT3G46450 446 / 7e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0512 CRAL_TRIO PF00650 CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence
>Lus10005452 pacid=23182227 polypeptide=Lus10005452 locus=Lus10005452.g ID=Lus10005452.BGIv1.0 annot-version=v1.0
ATGGGAGACCAGCCAAAAGATTCTAGCTCAAGCAATAACTCCCTTGTGACCAGTAGTGGGAACGGTAGAACCAAGAGCAATCGCAAGGGAGCATTGCACA
ATGCTCGTGGATGCTTTGGTAGTGGTGCGGTTGGTGACGTCGGCTTGTTTTTGTTGAAACTTGCGGCATTGGAAACCGTACGAAGGATCTCGAAGTCGAA
GTGTCCCCCTGTTTGGCATGGTGTTCAGGCTTTGCAGTTTCTTTGCTACCCGCCGTTCAAGTGGTTTCAGAGGTGGGCACCGTTCAAGGGACTGGTTCAG
GGAATTCAGATGATATCAAGACCATTGCTCGTCCTTTCAGTCGCGACAGCAGTTAGTGATGAATTAACTCACTCCAACGAACCTTCGGATGATAATGATG
GCTCTCATGCGGATTCTGAAACATCCCCACCAGAAGAACCACCTTCTTCTAGTGTGTCTGCTCTTGATGGAAGAATGTGCATAACGTTGCAAACCAGTGA
TGGCAATGCTGAAAATCTGGCGCCTGAAAATTGGATGCTGGAACTCCAAAAGGAGCTAGCAAATCAAGGAATCATGTTGCCCGAAAGGTTTAACGAAGAT
GAGCTACGTAGATTTTATGATGCTGCAGAAGGAAACTTCCAAAGCTTTCTCTTATCAATTAAGAATACGATCCGTTGGAGGGAAACATATCGAATTCTTT
CCGAAGAGGAGCTTGGAATGTGGTCAAATGTGGTGTTCTGGCATGGATATGACTTGAATAACCAGCCCTGTCTTATTGTTCGGCTTGGACTCGCCTGCAC
AAGCTTGCCAGTTCAGGATCGACCTCGGTTTGCTCAAGCAATCAGTAAGCCACTAAGTTCTTTTTCTTTGTCTATTATGGTTGTTATTTGTGCACGTCCT
TCGTCTTCTGATCTCTTACCGAAAGTATCTCAGGTGGAGTACGGAATCCTTCACTTCCTGAACAAAGATAATCCTCAGATAATGGTTATCGTGGACTGTG
CTGGGATAACTCCGTTGCGGATTCCCATGCAAATGGTGCGATCGTGTTCTTCGTATCTGCAGCATAATTTCCCCAACCGCCTTGGTCGCTTGCTGATCAT
ACGGCTGCCTCCCATACTGAAACCGGTCACGAAGAAGAAGCTTCGAGTCGAAGGAAAGATGTACCGCAAGGCTCTCTCCGAATATCTCGAGGAAGTTCCG
GCTTATCTCGGCGGATGCTGTGCTTGCCACCGATGCACCGAGACCACCAATCATCGTCGACCTGGAAATGAGGCGAACAAGAGGGAGCACGATGGCTACA
TTGGTGACCGTGATGATGATCGGACCTTGTTGCTTATGGATTCAGAGGTCGATAGTTCTGCCAAAGCCGAGTGGGACCGCTTGCTGAAGACTGCGGTAAT
CGGGATTCTCATGTCGTGGATTTTTGTGGCCTTGGTTGCTGGATTCTATGATCCTGAAACTCGTCCCTTTTAG
AA sequence
>Lus10005452 pacid=23182227 polypeptide=Lus10005452 locus=Lus10005452.g ID=Lus10005452.BGIv1.0 annot-version=v1.0
MGDQPKDSSSSNNSLVTSSGNGRTKSNRKGALHNARGCFGSGAVGDVGLFLLKLAALETVRRISKSKCPPVWHGVQALQFLCYPPFKWFQRWAPFKGLVQ
GIQMISRPLLVLSVATAVSDELTHSNEPSDDNDGSHADSETSPPEEPPSSSVSALDGRMCITLQTSDGNAENLAPENWMLELQKELANQGIMLPERFNED
ELRRFYDAAEGNFQSFLLSIKNTIRWRETYRILSEEELGMWSNVVFWHGYDLNNQPCLIVRLGLACTSLPVQDRPRFAQAISKPLSSFSLSIMVVICARP
SSSDLLPKVSQVEYGILHFLNKDNPQIMVIVDCAGITPLRIPMQMVRSCSSYLQHNFPNRLGRLLIIRLPPILKPVTKKKLRVEGKMYRKALSEYLEEVP
AYLGGCCACHRCTETTNHRRPGNEANKREHDGYIGDRDDDRTLLLMDSEVDSSAKAEWDRLLKTAVIGILMSWIFVALVAGFYDPETRPF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G46450 SEC14 cytosolic factor family ... Lus10005452
[exp]
0 1
AT1G16010 AtMRS2-1, AtMGT... magnesium transporter 2 (.1.2.... Lus10026063
[exp]
8.9 0.7077
AT4G21200 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELL... Lus10029081
[exp]
10.7 0.7641
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10035359
[exp]
12.3 0.7849
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Lus10004701
[exp]
12.8 0.7067
AT2G45630 D-isomer specific 2-hydroxyaci... Lus10041393
[exp]
15.3 0.7815
AT5G07610 F-box family protein (.1) Lus10014320
[exp]
18.6 0.6868
AT5G57685 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, A... Lus10006986
[exp]
21.0 0.7765
AT1G54115 ATCCX4 cation calcium exchanger 4 (.1... Lus10037682
[exp]
21.1 0.7778
AT2G25490 FBL6, EBF1 EIN3-binding F box protein 1 (... Lus10002913
[exp]
21.6 0.7502
AT3G46450 SEC14 cytosolic factor family ... Lus10004953
[exp]
27.7 0.7388

Lus10005452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.