Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28790 319 / 6e-111 Pathogenesis-related thaumatin superfamily protein (.1) AT5G40020 195 / 7e-62 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 186 / 1e-56 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 180 / 5e-56 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 177 / 6e-55 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 178 / 2e-54 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 172 / 3e-53 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 172 / 4e-53 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 171 / 9e-53 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75800 174 / 1e-52 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004954 [exp] 447 / 2e-161 AT2G28790 330 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1) Lus10016572 [exp] 345 / 7e-121 AT2G28790 328 / 3e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10040843 [exp] 342 / 1e-119 AT2G28790 322 / 6e-112 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004955 [exp] 201 / 5e-65 AT5G59350 147 / 2e-44 unknown protein Lus10008304 [exp] 184 / 1e-57 AT5G40020 328 / 4e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 184 / 2e-57 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 184 / 7e-57 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 181 / 3e-56 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 181 / 2e-55 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028800 [exp] 348 / 3e-122 AT2G28790 370 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G237600 [exp] 339 / 9e-119 AT2G28790 350 / 4e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.017G075500 [exp] 195 / 5e-62 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 191 / 4e-59 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 190 / 5e-59 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 189 / 1e-58 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 185 / 3e-57 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 183 / 3e-56 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.001G221700 [exp] 179 / 9e-56 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 180 / 1e-55 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10005453 pacid=23182215 polypeptide=Lus10005453 locus=Lus10005453.g ID=Lus10005453.BGIv1.0 annot-version=v1.0 ATGGCTTCCACTCAACACATCCTCTACGCCGTCGTTTCAATCCTCCTCCTCGCCCCCCTAACCCCACCCCAAGCCACGTCACCACTAACCTTGACTCTAG TCAACAACTGCCCCTTCACAGTCTACCCAGCCATCCAACCCTCCGCCGGCTCCCCCATCCTCCAAAACGGCGGCGGATTCCCCCTCCACCACTTCACCCA CAAATCCTTCCCCGCACCCGACCACCACTGGTCGGGCCGGATCTGGGCCCGAACCGGCTGCTCCCACACTCCCGACAACAAGTTCCGCTGCGTGACCGGA GATTGCGCCAACCGCCTCGAGTGCAACGGCCTCGGTGGCGCCACTCCGGCAACACTTGTCCAACTCACCCTCCACCATGGATCCGGCGACTTCGCTTCCT ATGGCGTTTCTCTCGTCGACGGGTACAACGTCCCGCTGACCGTGACCCCACACGAAGGGAAAGGCCGCTGCCCGGTGGTGGGTTGTCAGCCGGACTTGCT GCCCGGCTGCCCGGATAAGCTGAAAGTTTACGGCCCCCACGGCGGGGTGGTGGCGTGCAAGAGCGGGTGCGAAGCGTTTGGGACCGATGAGCTTTGCTGT AGGAACCATTACAACAGCCCGCACACGTGTCGCCCGTCGAGCTTCTCGGAGTATTTCAAGCGCGCGTGTCCTTCCTCGTTTACTTACGCGCATGACACGC CTTCGCTGATGCATGACTGCTCCTCGCCGCGTGAGCTCAAGGTCATCTTCTGCCACTGA
AA sequence Show only first row Show all	>Lus10005453 pacid=23182215 polypeptide=Lus10005453 locus=Lus10005453.g ID=Lus10005453.BGIv1.0 annot-version=v1.0 MASTQHILYAVVSILLLAPLTPPQATSPLTLTLVNNCPFTVYPAIQPSAGSPILQNGGGFPLHHFTHKSFPAPDHHWSGRIWARTGCSHTPDNKFRCVTG DCANRLECNGLGGATPATLVQLTLHHGSGDFASYGVSLVDGYNVPLTVTPHEGKGRCPVVGCQPDLLPGCPDKLKVYGPHGGVVACKSGCEAFGTDELCC RNHYNSPHTCRPSSFSEYFKRACPSSFTYAHDTPSLMHDCSSPRELKVIFCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	0	1
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	3.5	0.9895
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	3.6	0.9825
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	4.9	0.9894
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	5.7	0.9884
					Lus10026293 [exp]	6.2	0.9891
					Lus10041871 [exp]	7.9	0.9877
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	8.4	0.9883
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	8.8	0.9879
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10042052 [exp]	9.3	0.9401
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020206 [exp]	9.7	0.9783

Compare expression of checked genes

Lus10005453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.