Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 90 / 4e-22 unknown protein AT2G39560 44 / 2e-05 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004955 [exp] 140 / 2e-42 AT5G59350 147 / 2e-44 unknown protein Lus10040839 [exp] 124 / 5e-35 AT5G59350 160 / 2e-47 unknown protein Lus10016568 [exp] 122 / 2e-34 AT5G59350 166 / 1e-49 unknown protein Lus10023421 [exp] 85 / 2e-20 AT5G59350 115 / 2e-30 unknown protein Lus10040302 [exp] 85 / 2e-20 AT5G59350 117 / 3e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238300 [exp] 137 / 3e-40 AT5G59350 146 / 1e-41 unknown protein Potri.009G029300 [exp] 135 / 2e-39 AT5G59350 161 / 1e-47 unknown protein Potri.008G054400 [exp] 112 / 1e-30 AT5G59350 91 / 8e-21 unknown protein Potri.010G206100 [exp] 109 / 2e-29 AT5G59350 111 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005456 pacid=23182235 polypeptide=Lus10005456 locus=Lus10005456.g ID=Lus10005456.BGIv1.0 annot-version=v1.0 ATGCGGCTGCACAACCTGGCCGGACCTCCGCGGTTCCTGTTCACGATCAAGGAGGAGACGAAGGAGGATTTGGTTGAGTCGGAGGACGGGAGATCCAGGA GAATATCTCTGTCTCGGAGTAAGAGCGTGACCGAGATTCTCGCAACGGCGCCGTTTACGCCGATGGAGTCGCCGCGTTACTCGCTGCAGGGATTCAATCC GCTGTTTGAATCAGCGGCGGAGGCGGAGCTGAACCGGCTGATGTCCTCGCCGCCGCCGAAGTTCAAGTTCATGAGGGACGCGGAGGAGAAGCTGCTCAGA CGGTTAATGAAGGAATCCGCCGAGAACAACAACAGCGGCGGATTGGATTGTTTGGCGAAGTATTTAGCTCCGGCGGCGGAAGAAGAAGTTAGGGAAGGAT CGTTTTTGGGGTTTCTGTATGGAAAGAACAGAGAGGCGGCGGCTGGAAACCACCGTCTACCTATTTCTTCTCAGGTAATTCCATCGAACTCAGTATGA
AA sequence Show only first row Show all	>Lus10005456 pacid=23182235 polypeptide=Lus10005456 locus=Lus10005456.g ID=Lus10005456.BGIv1.0 annot-version=v1.0 MRLHNLAGPPRFLFTIKEETKEDLVESEDGRSRRISLSRSKSVTEILATAPFTPMESPRYSLQGFNPLFESAAEAELNRLMSSPPPKFKFMRDAEEKLLR RLMKESAENNNSGGLDCLAKYLAPAAEEEVREGSFLGFLYGKNREAAAGNHRLPISSQVIPSNSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59350			unknown protein		Lus10005456 [exp]	0	1
AT5G59350			unknown protein		Lus10005455 [exp]	1.0	0.9012
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	3.5	0.8406
AT5G12470			Protein of unknown function (D...		Lus10003180 [exp]	8.1	0.7990
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	10.8	0.7784
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	13.0	0.7772
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	20.8	0.7355
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	21.6	0.7354
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	22.3	0.7598
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	23.1	0.7336
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	25.3	0.7290

Compare expression of checked genes

Lus10005456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.