Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 340 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 310 / 1e-102 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 301 / 8e-100 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 283 / 5e-92 O-Glycosyl hydrolases family 17 protein (.1) AT2G39640 276 / 9e-89 glycosyl hydrolase family 17 protein (.1) AT5G55180 264 / 3e-85 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 259 / 2e-83 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 249 / 1e-80 Glycosyl hydrolase superfamily protein (.1) AT4G26830 249 / 2e-79 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 216 / 2e-66 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004962 [exp] 632 / 0 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 471 / 7e-166 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 470 / 3e-165 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 327 / 7e-110 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 316 / 1e-105 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10021088 [exp] 289 / 2e-96 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 289 / 4e-95 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 286 / 1e-93 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 284 / 5e-93 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240000 [exp] 430 / 1e-149 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 351 / 4e-119 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 348 / 3e-118 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 345 / 7e-117 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 302 / 3e-100 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 299 / 6e-99 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 290 / 2e-95 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 272 / 4e-88 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 269 / 7e-87 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 266 / 4e-86 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10005459 pacid=23182233 polypeptide=Lus10005459 locus=Lus10005459.g ID=Lus10005459.BGIv1.0 annot-version=v1.0 ATGAAAGCCGTGCACCAAGCTTTACACCTCGCGAATCTCACTGACTTCATCAAGGTCACCACCCCCCACGCTTTCTCCTTCCTCGCCGCGTCCCGCCCTG CCAGCACCGGCCGGTTCAGGCGCTTCGATGCCGCCATTCTCCGCCCGATCCTAGACTTCCATCTCCGGACCAGGACTCCGTTCATGGTGAATCCGTACCC GTTCTTCAGCTTCGGCACCGCCGACACGCTCGACTACGCCGTTTTCCAGCCGAACAAGGGGATCTACGATCGAGCTACTGGAAAAATATACACGAATCTG TTCGATGAGCTGATGGATGCGGCCTATTCGGCTATGAAGAAGCTTGATACGAGATTTGAAGATGTGGAGATTGTGATTGGGGAAACCGGGTGGCCGTCGG CGGGTGACCCGAACCAGCTGGGGGTCGGGTGGGAGAATGCGGTGTCGTACAATGGGAATTTGGTGAAGCATTTGAGATCGGGGAGAGGGACGCCGTTGAT GCCGAATCGGACTTTCGAGACTTACGTGTTTGCTCTGTTTAATGAGAATCTGAAGCCCTCTGTCTCCGAGCAGAATTACGGTCTTTTCAGGCCGGATTTG ACCGCCGTCTACGACGTCGGTGTTTTGCGCAGTCCGCAGGCCCAGTCGCCGCCAGCAAACGGCCGAGGAGTCCCGGCGAAATCGCCGCCTTCCGGCCACA AGTGGTGCGTTCCGAGATCGGACGCTAGCGACGCAGCGCTGCAGAGGAATATTGACTATGTGTGCAGCTCGGGAGTAGATTGCCAACCGATCCAGAAAGG CGGCGCGTGTTTCAACCCGAATACGGTCCGAGCGCACGCTTCCTACGCGATGAACGCCTACTACCAGAGATCCGGCCGGCACGATTCCGACTGTGACTTC AGCCGCACCGGATTCCTAACCTCCGACAATCCGAGCGACCAAGCGTGCAGCTTCGCTTCGATGATCGGTTGA
AA sequence Show only first row Show all	>Lus10005459 pacid=23182233 polypeptide=Lus10005459 locus=Lus10005459.g ID=Lus10005459.BGIv1.0 annot-version=v1.0 MKAVHQALHLANLTDFIKVTTPHAFSFLAASRPASTGRFRRFDAAILRPILDFHLRTRTPFMVNPYPFFSFGTADTLDYAVFQPNKGIYDRATGKIYTNL FDELMDAAYSAMKKLDTRFEDVEIVIGETGWPSAGDPNQLGVGWENAVSYNGNLVKHLRSGRGTPLMPNRTFETYVFALFNENLKPSVSEQNYGLFRPDL TAVYDVGVLRSPQAQSPPANGRGVPAKSPPSGHKWCVPRSDASDAALQRNIDYVCSSGVDCQPIQKGGACFNPNTVRAHASYAMNAYYQRSGRHDSDCDF SRTGFLTSDNPSDQACSFASMIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	3.2	0.8632
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	3.2	0.8167
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	4.9	0.8345
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	5.3	0.8117
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	6.9	0.8239
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10018314 [exp]	9.5	0.7779
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	11.8	0.7924
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	13.7	0.8201
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	15.3	0.7985
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10023839 [exp]	17.4	0.7752

Compare expression of checked genes

Lus10005459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.