Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59380 90 / 1e-22 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 78 / 2e-18 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G59800 39 / 0.0008 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004963 [exp] 241 / 1e-78 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005888 [exp] 46 / 4e-06 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10014989 [exp] 44 / 2e-05 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10038869 [exp] 41 / 0.0002 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2) Lus10040859 [exp] 40 / 0.0003 AT5G59800 66 / 3e-13 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10027447 [exp] 39 / 0.0006 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031100 [exp] 119 / 3e-34 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.001G240100 [exp] 109 / 2e-30 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G027600 [exp] 63 / 2e-12 AT5G59800 96 / 3e-23 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Potri.015G140100 [exp] 49 / 3e-07 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.012G138300 [exp] 47 / 2e-06 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10005460 pacid=23182224 polypeptide=Lus10005460 locus=Lus10005460.g ID=Lus10005460.BGIv1.0 annot-version=v1.0 ATGAGCTGGCTTCCGCAAGGATGGCTGGTGGAGGAACGAGTTAGATGTTCTGGTGGCACGGCCGGTACGGTTGATAAGTACTACTTCGATCCTACATCAG GCCGTCGGTTCAGGTCCAAGCGAGAGGTGCAGAACTTTCTGGAGACAGGATCGAAGCGAAAGAAACCGTCCGAGAACTCCGATGCTAATGCCAATTCTTC AGAGGGCACTCTCAGTAGTAGTAAGAAGAAGAAGAAGAGCAAGAAGCCACCAAAGGAAATCAAAGTAGCTTCTCATCTGGACTTCAACTTCTCGAATGTG CCGGACAGCGTCGAGTGGGTTCTCGCGGATTCGAAAAGCGGGACGTGGAATCCGTTCGTATCGGGTAAACAGCCGCCGCCCGATTCCGAGAGGGAAGTGT GGGATGTCACGTTCAAGTATCTGGCTGCTAGAAGTGTAGAATATACAACCAAAGGAAAGCTTCCGGTAAGAAAGTGA
AA sequence Show only first row Show all	>Lus10005460 pacid=23182224 polypeptide=Lus10005460 locus=Lus10005460.g ID=Lus10005460.BGIv1.0 annot-version=v1.0 MSWLPQGWLVEERVRCSGGTAGTVDKYYFDPTSGRRFRSKREVQNFLETGSKRKKPSENSDANANSSEGTLSSSKKKKKSKKPPKEIKVASHLDFNFSNV PDSVEWVLADSKSGTWNPFVSGKQPPPDSEREVWDVTFKYLAARSVEYTTKGKLPVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	0	1
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	2.4	0.9429
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031907 [exp]	2.8	0.9472
AT1G28120			unknown protein		Lus10026630 [exp]	3.0	0.9506
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	3.2	0.9439
AT5G57370			unknown protein		Lus10001311 [exp]	5.3	0.9366
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	5.7	0.9451
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	6.7	0.9413
AT3G54130			Josephin family protein (.1)		Lus10035536 [exp]	9.5	0.9325
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	10.2	0.9444
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	10.9	0.9427

Compare expression of checked genes

Lus10005460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.