Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55440 417 / 2e-149 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) AT2G21170 293 / 2e-99 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040807 [exp] 456 / 9e-165 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 456 / 9e-165 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 439 / 1e-154 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10012171 [exp] 296 / 5e-101 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10007575 [exp] 273 / 8e-92 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031200 [exp] 417 / 2e-149 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 405 / 8e-145 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 404 / 2e-144 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 403 / 5e-144 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.009G129500 [exp] 298 / 2e-101 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.004G168000 [exp] 296 / 4e-101 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00121 [flax] [poplar] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Lus10005461 pacid=23182228 polypeptide=Lus10005461 locus=Lus10005461.g ID=Lus10005461.BGIv1.0 annot-version=v1.0 ATGGCCAGAAAGTTCTTCGTCGGCGGCAACTGGAAATGCAATGGCACGAGCGAGGAGGTTAAGAAGATCGTCACTCTTCTGAACGAAGCCGAAGTTCCTT CTGAAGATGTCGTCGAAGTTGTTGTCAGTCCTCCATACGTGTTCCTTCCCGTGGTTAAAGGTCTGCTAAGGCCTGACTTCAAGGTTGCTGCCCAGAATTG TTGGGTTCGCAAGGGCGGTGCTTTCACTGGAGAGGTTAGTGCTGAGATGCTTGTGAATTTGGACATTCCCTGGGTGATTCTCGGTCATTCCGAGAGGCGA GCTCTTCTGAATGAGTCAGATGAGTTTGTTGGCGATAAGGTTGCATATGCACTAAGTCAAGGGTTGAAAGTGATTGCCTGTATTGGTGAGACACTTGAGC AACGAGAGTCCGGATCAACTCTGGCTGTTGTCTCTGCTCAAACCAAAGCAATTGCAGAGAAGATCAAAAGCTGGGACAATGTAGTTTTGGCTTACGAGCC AGTTTGGGCCATCGGTACCGGAAAGGTTGCCTCTCCAGCTCAGGCTCAAGAAGTCCATGCTGAATTAAGGAAGTGGCTTAATGACAATGTCAGTGCCGAA GTAGCTCAATCAACCAGAATAATCTATGGCGGTTCTGTTAATGGTGGAAACTGCAAAGAGTTGGGAGGGCAAACCGACGTCGATGGATTCTTGGTTGGCG GAGCTTCTCTAAAGCCGGAGTTCATCGACATCATCAAGGCTGCGACTGTCAAGAAGAGCGCTTGA
AA sequence Show only first row Show all	>Lus10005461 pacid=23182228 polypeptide=Lus10005461 locus=Lus10005461.g ID=Lus10005461.BGIv1.0 annot-version=v1.0 MARKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPVVKGLLRPDFKVAAQNCWVRKGGAFTGEVSAEMLVNLDIPWVILGHSERR ALLNESDEFVGDKVAYALSQGLKVIACIGETLEQRESGSTLAVVSAQTKAIAEKIKSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAELRKWLNDNVSAE VAQSTRIIYGGSVNGGNCKELGGQTDVDGFLVGGASLKPEFIDIIKAATVKKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10005461 [exp]	0	1
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	1.0	0.9076
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	10.0	0.8558
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	11.9	0.8658
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022328 [exp]	13.9	0.8248
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	16.6	0.8647
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	17.1	0.8103
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	18.5	0.8726
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	20.5	0.8293
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	24.0	0.8541
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	28.2	0.8204

Compare expression of checked genes

Lus10005461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.