Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28930 537 / 0 APK1B protein kinase 1B (.1.2.3) AT1G07570 530 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 465 / 1e-163 NAK Protein kinase superfamily protein (.1.2) AT2G39660 434 / 2e-151 BIK1 botrytis-induced kinase1 (.1) AT2G02800 422 / 2e-146 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 414 / 3e-143 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 400 / 4e-138 PBL1 PBS1-like 1 (.1.2) AT1G69790 395 / 2e-136 Protein kinase superfamily protein (.1) AT5G15080 391 / 4e-133 Protein kinase superfamily protein (.1) AT2G17220 387 / 1e-132 Kin3 kinase 3, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004964 [exp] 792 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10016537 [exp] 585 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 573 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10024391 [exp] 498 / 1e-176 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 495 / 2e-175 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 488 / 5e-173 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 483 / 1e-170 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 475 / 1e-167 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012850 [exp] 416 / 6e-144 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240400 [exp] 576 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 569 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 503 / 9e-179 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 481 / 2e-169 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 478 / 3e-168 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 436 / 5e-152 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 434 / 7e-151 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.007G062700 [exp] 399 / 4e-137 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.008G194700 [exp] 394 / 1e-134 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 394 / 3e-134 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005462 pacid=23182209 polypeptide=Lus10005462 locus=Lus10005462.g ID=Lus10005462.BGIv1.0 annot-version=v1.0 ATGGGGGTTTGCTTAAGCGCTCAGATTAAAGCTGCGAGCAGCAGCCAATTCAATTCCGGGGCAACTCCTAAGTACGTCAGCGATTATGCCACCGGTTCAG ACAAAGTACCGAGTTCGAATCCAGTAGTATCTCCAAAGAGGAGCGAGGGAGAGATTTTACAGTCCCCTAATCTGAAGATCTTCAGTTACTCAAACCTCAA ACTCGCCACGAAGAACTTTTGTGCTAATAGCGTGGTAGGAGAAGGCGGATTCGGATCGGTGTTCAAAGGATGGATCGACGAGAATACTTACACTGCAACG AAGCCTGGAACTGGAATGGTTGTAGCTATCAAGAAACTTAAACAAGAGAGCTTCCAAGGTCATCAGGAATGGCTTGCGGAAGTGAATTACTTGGGACAGT TTTCTCATCCTCACTTGGTGAAGCTGTTTGGATACTGCTTGGAAGACGAACACCGCCTTCTGGTTTACGAGTTCTTGCCTCGCGGAAGCTTGGAGAATCA TTTGTTCAGAAGAGGTTCGTATTTCCAGCCACTTTCGTGGAAACTAAGGCTGAAAGTAGCTCATGCTGCGGCCGAGGGACTTGTTTTCCTTCACAGCTCT GAAACAAAGGTCATCTATAGGGATTTCAAGACTTCCAACATTCTGCTTGATACTAATTATGATGCTAAACTCTGCGATTTCGGGTTGGCCAAAGATGGTC CGACGGGCGACAAGAGTCATGTAACTACCAGGGTCATGGGGACCCATGGATATGCTGCTCCAGAGTACTTAGCCACAGGGCATCTAACTGCAAAGAGCGA CGTGTACAGCTACGGAGTGGTTTTACTCGAGATGCTATCCGGAAGGAGAGCAATCGACAAGAACCGGCCATCGGGGGAACACAACCTGGTCGAGTGGGCG AAGCCATACCTGGCGCAGAAGCGCAAGACGTTACGAATACTGGACAACCGCCTCGAAGGGCAGTACACGTTGGAAGTTGCTTTCAAGGTGGCCGTGCTTG CTCACCGCTGCATTTCCGTGGAGGCCAAGTTACGGCCGAGTATGGACGAGGTGGTGGCCTCGTTAGAGGAGATTCGCCAATCGAACGAGATCATGATGAG CAATGCGAGTTACGAGGCACCGAGGTCGCGAAGAAGAAGCTCGGGTGATGCTGGTTGTGGTGGGAAAGTTTCTTCTTCTTATCCGAGGCCTTCTGGTTCT CCGTTGTATGCTTCGGTTGGGAAAGCTTAG
AA sequence Show only first row Show all	>Lus10005462 pacid=23182209 polypeptide=Lus10005462 locus=Lus10005462.g ID=Lus10005462.BGIv1.0 annot-version=v1.0 MGVCLSAQIKAASSSQFNSGATPKYVSDYATGSDKVPSSNPVVSPKRSEGEILQSPNLKIFSYSNLKLATKNFCANSVVGEGGFGSVFKGWIDENTYTAT KPGTGMVVAIKKLKQESFQGHQEWLAEVNYLGQFSHPHLVKLFGYCLEDEHRLLVYEFLPRGSLENHLFRRGSYFQPLSWKLRLKVAHAAAEGLVFLHSS ETKVIYRDFKTSNILLDTNYDAKLCDFGLAKDGPTGDKSHVTTRVMGTHGYAAPEYLATGHLTAKSDVYSYGVVLLEMLSGRRAIDKNRPSGEHNLVEWA KPYLAQKRKTLRILDNRLEGQYTLEVAFKVAVLAHRCISVEAKLRPSMDEVVASLEEIRQSNEIMMSNASYEAPRSRRRSSGDAGCGGKVSSSYPRPSGS PLYASVGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	3.5	0.8454
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026553 [exp]	4.0	0.8305
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	4.5	0.8540
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	4.7	0.8168
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	5.9	0.8361
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	6.5	0.8364
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	7.1	0.8654
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10007736 [exp]	8.0	0.8044
AT1G80940			unknown protein		Lus10041624 [exp]	9.0	0.8265
AT1G80940			unknown protein		Lus10024095 [exp]	10.0	0.7987

Compare expression of checked genes

Lus10005462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.