Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 84 / 2e-18 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT3G48670 83 / 3e-18 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT4G00380 82 / 5e-18 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G13790 71 / 4e-14 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT4G01780 67 / 1e-12 XH/XS domain-containing protein (.1) AT1G80790 62 / 6e-11 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01180 60 / 2e-10 XH/XS domain-containing protein (.1) AT5G59390 58 / 1e-09 XH/XS domain-containing protein (.1) AT3G12550 55 / 1e-08 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032933 [exp] 197 / 5e-61 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10002702 [exp] 86 / 4e-19 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 86 / 5e-19 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 85 / 8e-19 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 84 / 2e-18 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 72 / 3e-14 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002703 [exp] 47 / 6e-06 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000949 [exp] 44 / 9e-05 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 99 / 1e-23 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 97 / 4e-23 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 75 / 2e-15 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10005463 pacid=23182242 polypeptide=Lus10005463 locus=Lus10005463.g ID=Lus10005463.BGIv1.0 annot-version=v1.0 ATGGAGCGAGAGAGAGCCAAGCGTGATGTGGAAGCTCAAAGAATGGAGCTTGAACAGCAGGAGAAGCAGTTACAGGAGCGGGAGAAACTTAACGAACACG AAATAACTCAAATTAGTGAACTGAAGCAGAAAAAAGAGATGAACGAGAAAGCAATCTTGGAGCACAAGAAAGCAGAAGGTGAAGTGCTCACTATGGCACA TGAGCACCAGCGAGAGAAGGAGGACCTGCACAAGAAAATCCTCGAGTTGCAGACCCAACTGGACGCGAAGCAGGCAGTGGAGCTCGAGATGGAGCAGCTA AGAGGAGCATTGCAGGTTCTCGGACACATGAACGAAGACGACGATCCAGAAACCCTGAAACAGAAGAAAGAAATCAGCGAGAAGCTGGAGGAGAAGGAGG AAGAGTTGGAAGACTTGGAGGCTCTCAACCAAACTCTACTCACGAAGCAGGAGAGGATCGAACAAGAACTCGTGGCAGGTCGCAAGGAGTTGATCAATGG GTTCTTGACTTTTGGAAAAGCCGGAAGAGCGAATATCGGTGTGAAAAGCACCGGAGAGATCAAGCCTGCGAAAGGGAGTGCGAAAGCGAAAGCAGGGGAA GCGGCAGAGCTTTGGAATTTCAAGGAGGATAGAGATGCAAAGTTGATAGAGGGGATTGAGTTCATATGTAGGAGCTGGAAGCGTTTGAAATAG
AA sequence Show only first row Show all	>Lus10005463 pacid=23182242 polypeptide=Lus10005463 locus=Lus10005463.g ID=Lus10005463.BGIv1.0 annot-version=v1.0 MERERAKRDVEAQRMELEQQEKQLQEREKLNEHEITQISELKQKKEMNEKAILEHKKAEGEVLTMAHEHQREKEDLHKKILELQTQLDAKQAVELEMEQL RGALQVLGHMNEDDDPETLKQKKEISEKLEEKEEELEDLEALNQTLLTKQERIEQELVAGRKELINGFLTFGKAGRANIGVKSTGEIKPAKGSAKAKAGE AAELWNFKEDRDAKLIEGIEFICRSWKRLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00380		FDM2	factor of DNA methylation 2, X...		Lus10005463 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	15.1	0.8633
AT5G59970			Histone superfamily protein (....		Lus10041919 [exp]	27.6	0.8409
AT3G13898			unknown protein		Lus10006016 [exp]	32.9	0.7987
					Lus10042510 [exp]	46.5	0.7775
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	56.5	0.8310
AT5G03620			Subtilisin-like serine endopep...		Lus10035598 [exp]	61.4	0.7443
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	75.5	0.7396
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	75.5	0.8271
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	81.5	0.8178
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	125.5	0.8219

Compare expression of checked genes

Lus10005463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.