Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29050 335 / 4e-113 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G63120 269 / 4e-88 ATRBL2 RHOMBOID-like 2 (.1) AT3G53780 268 / 1e-86 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G12750 238 / 3e-76 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT5G07250 238 / 8e-76 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G52580 204 / 5e-63 ATRBL5 RHOMBOID-like protein 5 (.1) AT4G23070 194 / 3e-59 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G77860 167 / 4e-48 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004965 [exp] 481 / 2e-170 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 297 / 4e-98 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 304 / 7e-97 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024497 [exp] 288 / 1e-95 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 284 / 9e-94 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 239 / 2e-75 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10028036 [exp] 169 / 1e-48 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10003743 [exp] 166 / 2e-47 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031900 [exp] 347 / 5e-118 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 342 / 4e-116 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 323 / 4e-108 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 292 / 3e-97 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 288 / 2e-95 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 270 / 2e-88 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 255 / 3e-82 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.002G090400 [exp] 162 / 1e-45 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10005464 pacid=23182239 polypeptide=Lus10005464 locus=Lus10005464.g ID=Lus10005464.BGIv1.0 annot-version=v1.0 ATGGGGAGAAGAAGGAATTCGAGTGCGTACGAAATCGACGTGGGGGACGACGACAGGCGGCGGAACAACGACGACTTCAAGCCGTTCAAGCAGTGGTTCC CTTGGCTGATTCCGTCGTTCGTTGCCGCCAATTGCGTGTTGTTCGTCATTGAAATGTATATTAATGATTGCCCAGAACACTCCAGGGATTGCATCGGCGT TGAATTCTTGGGGAGATTCGCTTTCCAGCCGTTGAAGGAGAATCCTCTGCTCGGCCCTTCCTCCGACGCGTTGATGAAGATGGGAGCCATGGATGTGGAA AAAGTGGTGAAAGGGCACCAACCATGGCGTTTGATGTCTTGCATTTGGTTGCATGCTGGAGTCTTCCATTTGCTTGCCAACATGCTTAGTCTCTTATTCA TCGGCATCCGTCTCGAGCAAGAATTCGGGTTTATTCGAATAGGGATGGTCTACCTTCTGTCCGGTTTCGGAGGAAGTGTGATGTCAGCTCTGTTCCTCCA GTTAGGCATCTCTGTTGGTGCTTCCGGTGCCCTTTTCGGGTTACTCGGCGCCATGCTCTCGGAGCTCATCACAAACTGGACAATCTATGCAAATAAGTTT GCAGCATTGTTGACCCTTGTCATCATTGTGGTACTGAATTTAGCAGTAGGGATTCTCCCACACGTCGATAATTTCGCGCACATAGGAGGTTTCATATCCG GTTTCCTTCTCGGTTTCATTTTCTTGATCAGGCCGCAGTTCGGTTGGGTTAGCCAGAAGACTTGTCCTCCAGGCTTCACAGCACCCCCTGCTAAATCTAA GTACAAAGCGTATCAGTACTTCCTCCTTGCTCTAGCACTGATACTTTTGCTGTCCGGATTCGCCATTGCGCTGTACGATCTTTTCAAAGGAGTCGATGTG AATGAACACTGCCCTTGGTGTCAATACCTCACCTGCATTCCTACACCATTGTGGAGTTGCAAATCACCCAAAGTATACTGTGAGGTAATTGATTTCCTTT CTTCTCCCTTTTCGACAATGCAATGCGAGCTTATTGACATCCACGGATTTTGTAACCGGTTATTCGCAGTCATCGCAATTCGGCCTTCAATTGAACTTGA CATGTATGTCAACTGGGAAAAGTGGGATCTACATTCTTCCAGATGA
AA sequence Show only first row Show all	>Lus10005464 pacid=23182239 polypeptide=Lus10005464 locus=Lus10005464.g ID=Lus10005464.BGIv1.0 annot-version=v1.0 MGRRRNSSAYEIDVGDDDRRRNNDDFKPFKQWFPWLIPSFVAANCVLFVIEMYINDCPEHSRDCIGVEFLGRFAFQPLKENPLLGPSSDALMKMGAMDVE KVVKGHQPWRLMSCIWLHAGVFHLLANMLSLLFIGIRLEQEFGFIRIGMVYLLSGFGGSVMSALFLQLGISVGASGALFGLLGAMLSELITNWTIYANKF AALLTLVIIVVLNLAVGILPHVDNFAHIGGFISGFLLGFIFLIRPQFGWVSQKTCPPGFTAPPAKSKYKAYQYFLLALALILLLSGFAIALYDLFKGVDV NEHCPWCQYLTCIPTPLWSCKSPKVYCEVIDFLSSPFSTMQCELIDIHGFCNRLFAVIAIRPSIELDMYVNWEKWDLHSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10005464 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	4.9	0.8738
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10024271 [exp]	15.2	0.8206
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10040160 [exp]	15.2	0.7982
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	18.4	0.8375
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	22.4	0.8289
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10030209 [exp]	25.1	0.8261
					Lus10042024 [exp]	25.9	0.8132
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	32.2	0.8053
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	33.2	0.7996
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	34.9	0.7894

Compare expression of checked genes

Lus10005464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.