Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029457 [exp] 117 / 1e-29 AT3G04020 129 / 4e-34 unknown protein Lus10019563 [exp] 96 / 3e-22 ND / Lus10038673 [exp] 91 / 2e-20 ND / Lus10026801 [exp] 75 / 1e-14 AT5G24530 142 / 7e-38 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021572 [exp] 63 / 2e-11 ND / Lus10032678 [exp] 53 / 6e-08 ND / Lus10043133 [exp] 54 / 7e-08 AT1G04760 290 / 2e-98 vesicle-associated membrane protein 726 (.1) Lus10033089 [exp] 47 / 1e-05 ND / Lus10010234 [exp] 42 / 0.0004 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005465 pacid=23174342 polypeptide=Lus10005465 locus=Lus10005465.g ID=Lus10005465.BGIv1.0 annot-version=v1.0 ATGCTTGATGTACTGCCAGACAACGTAAACAATGTATACGGGCTACCATCACATACTAATCTTGCCAAGGTAAATATTGAACATTGCGGCAGACTTGTGC TGAAGAAGTTTCTATGGTTGACTGGTACAACGAGTAATAAGCACCAGAACATGGACATTACACCACTTCAGGATGCCAAGAAGAAATGTGAAGATGCGAC TGCCTATGCCAAGATTTACATGTTCCTTTCACTAGGATCTTTGTTGGTTGCAACAAATAGCTGTAGGGTGACTATGAAGTATGCGAAGTTCCCTTGGTCT TGGCAACATCGAGATCGCAAGTCACCACTGGTTGGCATACGTGGAAAATCATCTGCTTCTCGGGCTGTAGGACTAGTACCGTGTTACATCTGTGATATGT ACGTGTTATGTCCTTCATTTCTGTTCAAGTGTCCTGTGACGTTTCTATTATGTCGGGATGACGACGAGACAACAAAATGCGCTGACAACGAAACAAAAGC GGAGAAGGGAGCTTACGATGCCAAAGAGGATGCTGAGAAAGATGTTGGAGAAGACGATGTCGAGAAGAATGACAAGAAAAAAGATGAAGGCTCAAGGCAA GCCTTTCCAGGAATCCTCTTCATAGATTTCTTCACGGAGGGTTGGCTAGGACTATCACTTCCCGCCATGAGAGTCTTGGTCATATCCTTGCTCGAGATGA TGATTGACAGTACACCCACACATTTGGAGTATCTAGTGGCTCATAATTTGCATCTCATGTGCGCTTCGTCTTCTTCACCTCTTTTTATTTGTGCCTATAT TTCTCGAGTGGCCGGATACTTGGTGGTTCATGACCGGTTCAGAGATATCCCGACCTACCCGTCGATGATGATGGATTCAGCTTTGCTCGTTCGCATGAAG TTTCTTCGTGTGGTGCATGGCATTAGTGATAGGGGCTTCGGGATGACTGATGATGCCTTCATTCAAGGAGATGTTGTGGATGAGGAGGCATGA
AA sequence Show only first row Show all	>Lus10005465 pacid=23174342 polypeptide=Lus10005465 locus=Lus10005465.g ID=Lus10005465.BGIv1.0 annot-version=v1.0 MLDVLPDNVNNVYGLPSHTNLAKVNIEHCGRLVLKKFLWLTGTTSNKHQNMDITPLQDAKKKCEDATAYAKIYMFLSLGSLLVATNSCRVTMKYAKFPWS WQHRDRKSPLVGIRGKSSASRAVGLVPCYICDMYVLCPSFLFKCPVTFLLCRDDDETTKCADNETKAEKGAYDAKEDAEKDVGEDDVEKNDKKKDEGSRQ AFPGILFIDFFTEGWLGLSLPAMRVLVISLLEMMIDSTPTHLEYLVAHNLHLMCASSSSPLFICAYISRVAGYLVVHDRFRDIPTYPSMMMDSALLVRMK FLRVVHGISDRGFGMTDDAFIQGDVVDEEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005465 [exp]	0	1
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	2.6	1.0000
					Lus10024550 [exp]	3.7	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	4.6	1.0000
					Lus10010778 [exp]	11.5	1.0000
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	12.0	1.0000
					Lus10000550 [exp]	12.3	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	13.3	1.0000
					Lus10011496 [exp]	16.5	1.0000
					Lus10011061 [exp]	17.1	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	17.9	1.0000

Compare expression of checked genes

Lus10005465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.