Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55610 169 / 6e-49 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) AT2G39800 164 / 2e-47 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001016 [exp] 192 / 3e-60 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001018 [exp] 189 / 7e-59 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10030158 [exp] 192 / 5e-57 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004697 [exp] 177 / 1e-54 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040264 [exp] 177 / 8e-53 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 177 / 2e-52 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 173 / 3e-50 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 167 / 3e-48 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005468 pacid=23174343 polypeptide=Lus10005468 locus=Lus10005468.g ID=Lus10005468.BGIv1.0 annot-version=v1.0 ATGGGAGAGATAAAGATAACAAGTAAACATACGAACATCCACAAGCTCCAAGACATAGTGGTCAAGGAGGCCTTGGTATATAGCATCATTGGAACTGGTC TCTTACTAGAAGGTGGAAAAGAGGCCAGGCGATCAAATGCAATTTCGCACAAGGTAATCACTGATGGAATTGCTGACGAAGTCCGGAGAAGACTTATCGG ACTTGTGACTTCAAGAGACGAAATTTCTGACCTCCTTAAGCGGGATGATGTGATTGATCTTGTGATTCCTAGAGGCAGGAACAAACTGGTTTCTACTATC AATGCATCAACTAAAATTCCTGTTCTGGGTCATGCTGATGGAATTTGTCATGTATATGTTGACAAGTATGCTAGTATAACAACTGCGAAGCATATTGTGC TGGATGCAAAGGTAGATTATCCAGCTGCCTTGGCTGGTATCCCTATGGTGGTGGTGGGTGAGGTGGTGGTAATCCGATGCTCATCATGGACAACTTGTGG AAGACAGTTGCTTGTGCTGCAGCTGGCCCCTCCTAATCTGGGTGATGTGAAGCCTCAACCTCCTCCTTCATTCCAGCTCTCGCTCAACCATGGCATTGTG CAAGTGGCTGTTGTGCACCTCTATGGCGAGAAGGGGCTGTTGAAGCATCCTTGA
AA sequence Show only first row Show all	>Lus10005468 pacid=23174343 polypeptide=Lus10005468 locus=Lus10005468.g ID=Lus10005468.BGIv1.0 annot-version=v1.0 MGEIKITSKHTNIHKLQDIVVKEALVYSIIGTGLLLEGGKEARRSNAISHKVITDGIADEVRRRLIGLVTSRDEISDLLKRDDVIDLVIPRGRNKLVSTI NASTKIPVLGHADGICHVYVDKYASITTAKHIVLDAKVDYPAALAGIPMVVVGEVVVIRCSSWTTCGRQLLVLQLAPPNLGDVKPQPPPSFQLSLNHGIV QVAVVHLYGEKGLLKHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10005468 [exp]	0	1
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	1.4	0.8175
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	2.8	0.7427
					Lus10033763 [exp]	6.8	0.7590
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	10.5	0.7508
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	13.6	0.7271
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	14.9	0.7271
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	16.1	0.7271
AT5G27260			unknown protein		Lus10032874 [exp]	17.2	0.7271
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	18.2	0.7271
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	19.2	0.7271

Compare expression of checked genes

Lus10005468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.