Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45160 956 / 0 Protein kinase superfamily protein (.1.2) AT3G17850 717 / 0 Protein kinase superfamily protein (.1) AT5G62310 660 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G48490 608 / 0 Protein kinase superfamily protein (.1.2.3) AT1G30640 274 / 1e-81 Protein kinase family protein (.1) AT4G33080 269 / 4e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT5G09890 261 / 2e-77 Protein kinase family protein (.1.2) AT4G14350 255 / 9e-75 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 255 / 1e-74 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G19400 253 / 4e-74 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031332 [exp] 689 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10038912 [exp] 618 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10027196 [exp] 611 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031906 [exp] 473 / 3e-148 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003541 [exp] 266 / 2e-78 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10033911 [exp] 265 / 3e-78 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10011814 [exp] 257 / 7e-76 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 257 / 8e-76 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10042650 [exp] 256 / 2e-75 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G263000 [exp] 1260 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G044700 [exp] 685 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 670 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 549 / 1e-178 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 536 / 7e-174 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G167800 [exp] 263 / 2e-77 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 260 / 1e-76 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G146900 [exp] 259 / 3e-76 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.005G226700 [exp] 259 / 5e-76 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 258 / 1e-75 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005470 pacid=23174344 polypeptide=Lus10005470 locus=Lus10005470.g ID=Lus10005470.BGIv1.0 annot-version=v1.0 ATGCTTGAGAAAATTGACTCCTCATTGGAACAAGAGTTTGAAATAGCACAAGATCTCCTTAGCCTTGCTCAACTGTGCGTGGAGATGTCCTGTTCTCAGT TCCGTGATGAGTGTGATGCAATTGTTCAAGATCTTACTGAGAAAAGGAAACAATGTCAAACAGGACTCCTCAAGTGGCTATGTACTCGCATACTTTTTAT CTTAACCCGGTGCACTAGAGTACTGCAGTGTGAGAAGGACAGTGAACCCATTGATGAAATGACACTCAGTAAGTTGAAGAAATGTCTAGAAAGCATACCA TCTGTGGAATTGAGCTGGCCAGTTCATCTTGAGATTGCTGATTCTGGTTCAGTCGACTCTCTGAATAAGAAGGGTAAAATAAAAACAGAAGTGTGGGGAC AAGATGATTTGTCTTCTCTACCTGAGGTAGTGTACTGTGGGTCTGGTCAGAATGATGCAGTATTCAGAAAAGATTCTTTAGAATTTGAACAAAGGATGGC TTCTCAAAATCCTAAACCTGATGTTCTCTCACAAGCGCATCAGTTATGTCCACGTCGTAATCGCTTAGTTGGAAATTTGGAAAATGAATCCAACAGTGTA CTACAGGAGCAGGGACCTAAGTCGGATGAGTTGCTCCGTAGCCAAGAGCCAGGTGTAGAAGGAACTGATTCAGTAATCTGTCGGATATGTGAAGAACTTG TTCCAATCGGCCACTTGGAATCCCACTCTTACATATGTGCTTATGCAGAAAAGTGTGACGTAAATGGTCTAGATTTGGATGATCGGCTATCATATCTTGC AGAGGTACTGGAGCAGATTGTACACTCACGAAATATGATCTCTCACCCATCTTATGGTAGTCCTTCAAGTATACGAACTAGCAACTCTGTCACAACGGAA GGCTGTTCTCCCAAGATCAGTGAATGGCGGAATAAAGGTGTAGAAGGGATGTTTGAGGACATACATGAGATGGATACTGCCAGCATAGATGAGCCCCATT TTTCATTATTTAACTTAAGGAATCATTTAGGCATTAAACTCAGCAACCATGGAACACCTTCATCAACTGGGAGTGTGGCATCAGTTTCTTCGACAAATTC CCCTATGGCTGGTCACTTCGATTCTTTCTGGCTAGAACATAACAATCCATCTGAGCTGGAGGATGTTCAACAGATGGCTGATCTTGCAGACATCGCTCGC TGTGTGGCTGGCACAGATCTCTCAAAGGATCCTTCTTGTGAGTTTCTTGTTGCCTGTCTGCAGGATTTGCAGAATGTTTTTCTGCATAGTAAACTCAAAG CTCTCGTAATAGACACCTTCGGGGGCCGAATAGAGAAGCTTCTACGGGAAAAGTATGTCGTTTCATGTGACCTATTGGATACAAAAAGTCCCAGTGACGC CAAATTTAAAGGAAATTCTAGGTTCCTGTTGGATAATACACCCTTAAGTAGCGCAGGATCAACTCCCTTACATTCATCACATAAAGATAGGACAAGCATA GATGATTTCGAGATTATAAAACCAATAAGCAGAGGTGCCTTTGGAAAAGTCTTTCTTGCTCGAAAAAGAACTACTGGAGATTTGTTTGCAATAAAGGTGC TCAAGAAAGTCGATATGTGGCGCAAGAACGACGTTGAGCGGATATTGGCTGAGCGTAACATACTGATAACTGTTAGAAACCCATTTGTGGTCCGATTTTT CTATTCTTTTACTTGCAGAGATAACCTCTACTTGGTTATGGAATATCTGAATGGTGGCGATTTATACTCTCTTCTGAGGAAAGTTGGTTGCCTCGAGGAA GTTGTAGCCCGTATATATATTGCTGAGCTGGTTCTTGCTTTAGAGTACCTCCATTCCGTTGGTATTGTGCATCGTGATCTTAAGCCAGACAATATTTTAA TTGCACATGATGGGCACATCAAGCTAACAGACTTTGGACTATCAAAGATTGGCCTTCTAAACAACACCATTCAGCTCTCGGGATCAGCAATAAACGAAGG CACTTTATCAGATACTCCCGATTCCAGTGAGGACCAAACGGAAGAAAAAGGTCAACATTCCGCTGTTGGTACTCCCGACTACCTGGCCCCAGAAATTCTT CTTGGAAGAGAGCATGGTTATGCTTCTGACTGGTGGTCAGTAGGAATAATTCTTTTTGAGCTTATAACTGGAATTCCACCATTCACGGCTGAGCAACCTG AGTTGATATTTGACAACATCCTCAATAGGAAAATTCCGTGGCCTTCAGTTCCTGGTGACATGTCTTGTGACGCCCAAGACTTGATCGAAAGATTGCTTAT CCATAACCCAGACCAGCGTCTAGGAGCAAATGGTTCATCTGAGGTTAAATCACATCCATTTTTCCGGAGAATTGATTGGGATAATCTTGCATCATTAGAG GCCGCATTTGTACCAGTTCCTGAGGGTGCAGACGATACAAGTTACTTCATGTCTCGGTTCTCCCAACTGTCTAGCGGATTAGTGAACAATCCCAGCAGTA GTAACTCGGATGATGGCTCGGGCTGCTCATCCTCAAACTCCAAACTTGAGATGGATGACTGTGGTGACCTGACAGAGTTCAATTCATTGCCCCTCGACCT TTCCTTGATAAACTTTTCATTCAAGAACTTGTCACAGTTAGCTAGCATAAATCACGACGTGCTGTTACAGAACGGTAGGGATTCGTTGAAGAACTCTCCG TCAAGAGCACCAGGGAGTAGTTAG
AA sequence Show only first row Show all	>Lus10005470 pacid=23174344 polypeptide=Lus10005470 locus=Lus10005470.g ID=Lus10005470.BGIv1.0 annot-version=v1.0 MLEKIDSSLEQEFEIAQDLLSLAQLCVEMSCSQFRDECDAIVQDLTEKRKQCQTGLLKWLCTRILFILTRCTRVLQCEKDSEPIDEMTLSKLKKCLESIP SVELSWPVHLEIADSGSVDSLNKKGKIKTEVWGQDDLSSLPEVVYCGSGQNDAVFRKDSLEFEQRMASQNPKPDVLSQAHQLCPRRNRLVGNLENESNSV LQEQGPKSDELLRSQEPGVEGTDSVICRICEELVPIGHLESHSYICAYAEKCDVNGLDLDDRLSYLAEVLEQIVHSRNMISHPSYGSPSSIRTSNSVTTE GCSPKISEWRNKGVEGMFEDIHEMDTASIDEPHFSLFNLRNHLGIKLSNHGTPSSTGSVASVSSTNSPMAGHFDSFWLEHNNPSELEDVQQMADLADIAR CVAGTDLSKDPSCEFLVACLQDLQNVFLHSKLKALVIDTFGGRIEKLLREKYVVSCDLLDTKSPSDAKFKGNSRFLLDNTPLSSAGSTPLHSSHKDRTSI DDFEIIKPISRGAFGKVFLARKRTTGDLFAIKVLKKVDMWRKNDVERILAERNILITVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRKVGCLEE VVARIYIAELVLALEYLHSVGIVHRDLKPDNILIAHDGHIKLTDFGLSKIGLLNNTIQLSGSAINEGTLSDTPDSSEDQTEEKGQHSAVGTPDYLAPEIL LGREHGYASDWWSVGIILFELITGIPPFTAEQPELIFDNILNRKIPWPSVPGDMSCDAQDLIERLLIHNPDQRLGANGSSEVKSHPFFRRIDWDNLASLE AAFVPVPEGADDTSYFMSRFSQLSSGLVNNPSSSNSDDGSGCSSSNSKLEMDDCGDLTEFNSLPLDLSLINFSFKNLSQLASINHDVLLQNGRDSLKNSP SRAPGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	1.7	0.9863
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10012647 [exp]	2.4	0.9828
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	2.4	0.9675
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10027345 [exp]	3.0	0.9787
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	4.5	0.9701
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	8.7	0.8929
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	10.9	0.9394
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	16.6	0.9696
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	17.1	0.8948
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	17.8	0.8826

Compare expression of checked genes

Lus10005470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.