Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 574 / 0 Protein of unknown function, DUF642 (.1) AT4G32460 570 / 0 Protein of unknown function, DUF642 (.1.2) AT5G25460 561 / 0 Protein of unknown function, DUF642 (.1) AT1G80240 463 / 6e-164 Protein of unknown function, DUF642 (.1) AT3G08030 406 / 2e-141 Protein of unknown function, DUF642 (.1.2) AT2G41810 399 / 1e-138 Protein of unknown function, DUF642 (.1) AT2G41800 395 / 3e-137 Protein of unknown function, DUF642 (.1) AT1G29980 342 / 7e-116 Protein of unknown function, DUF642 (.1.2) AT2G34510 340 / 4e-115 Protein of unknown function, DUF642 (.1) AT5G14150 146 / 4e-40 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013112 [exp] 652 / 0 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 644 / 0 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 446 / 6e-157 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 446 / 3e-156 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 427 / 2e-149 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 425 / 1e-148 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 390 / 6e-135 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 389 / 1e-134 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 387 / 1e-133 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250100 [exp] 590 / 0 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 588 / 0 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 505 / 5e-180 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 502 / 7e-179 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 420 / 8e-147 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 413 / 3e-144 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 408 / 3e-142 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 405 / 6e-141 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 394 / 8e-137 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 357 / 1e-121 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10005474 pacid=23174337 polypeptide=Lus10005474 locus=Lus10005474.g ID=Lus10005474.BGIv1.0 annot-version=v1.0 ATGACAGGATCAGGAGGAGAAGTTTCTGTTACGCTACTTGTGCTCACCTTGCTGCTTCTTGCCACCTACAACTCATGCTTCGCCATTGGGGACGGGTTGC TAAGGAACGGGAACTTTGAGCATGGACCGAGCGGGAAGGACATGAAAGGGACACAAATAACAGGAAAGTATGCAATCCCAGAGTGGGAAATATCTGGTTT CGTTGAGTACATTAGGTCCGGACAGAAGCAAGGTGACATGCTTTTGGTAGTTCCAGAAGGTGCATTCGCTGTTAGGCTGGGAAACGAGGCATCTATAAAG CAGCGTGTCAAAGTCATGAAAGGGATGTACTATTCCATCACCTTTAGTGCTGCACGCACCTGCGCCCAACAGGAGCGTCTCAACATCTCCGTCACACCCG ACTATGGAGTGTTGCCCATGCAGACCATGTATAGCAGCAACGGCTGGGATTCATACGCATGGGCTTTCAAAGCTCAATTCTCTTACGCAGACATTCTCAT TCATAATCCTGGTGTTGAAGAGGATCCTGCTTGTGGTCCTTTGGTCGATGCTGTCGCTATCAGGGCCTTGTACCCTCCCAAACCCACCAACAAGAACATA CTCAAGAACGGAGGGTGGGAAGAAGGCCCATACATCTTACCAAACACATCGTGGGGAGTCCTAATCCCTCCACACATAGAGGACAAGAACTCCCCTCTCC CTAGCTGGATTGTCGAATCTCTTAAGGCCGTCAAGTATATAGACTCCGACCACTTCTCTGTCCCACAAGGCCGCCGCGCCGTTGAGCTTGTCGCCGGCAG AGAAAGCGCCATCGCCCAAATCGCTCGCACCATCCCGGGAAAGACCTACACCCTCAGCTTCGCAGTCGGCGACGCCAGTAATGCCTGTGCCGGATCTATG CTCGTCGAGGCTTTTGCCGGGAAGGCCAATCTAAAGGTTCCTTACACTTCCAATGGGAAGGGTGGGTTTAAGCGGGCGGTGCTCCGATTCGTTGCGGAGT CAGATCGGACCCGAGTCATGTTCTACAGCTCCTTCTACCACATGCGGAATGATGACTTTGCGTCGCTATGTGGGCCGGTCATCGATGACGTCAAGCTGTT GAGCGTTCGAAACCCCACGCGCGTGTAA
AA sequence Show only first row Show all	>Lus10005474 pacid=23174337 polypeptide=Lus10005474 locus=Lus10005474.g ID=Lus10005474.BGIv1.0 annot-version=v1.0 MTGSGGEVSVTLLVLTLLLLATYNSCFAIGDGLLRNGNFEHGPSGKDMKGTQITGKYAIPEWEISGFVEYIRSGQKQGDMLLVVPEGAFAVRLGNEASIK QRVKVMKGMYYSITFSAARTCAQQERLNISVTPDYGVLPMQTMYSSNGWDSYAWAFKAQFSYADILIHNPGVEEDPACGPLVDAVAIRALYPPKPTNKNI LKNGGWEEGPYILPNTSWGVLIPPHIEDKNSPLPSWIVESLKAVKYIDSDHFSVPQGRRAVELVAGRESAIAQIARTIPGKTYTLSFAVGDASNACAGSM LVEAFAGKANLKVPYTSNGKGGFKRAVLRFVAESDRTRVMFYSSFYHMRNDDFASLCGPVIDDVKLLSVRNPTRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	0	1
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031907 [exp]	1.0	0.9620
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	4.9	0.9613
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	5.5	0.9443
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	8.5	0.9427
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	8.7	0.9543
					Lus10003802 [exp]	8.7	0.9483
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	13.4	0.9465
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010936 [exp]	15.0	0.9414
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	18.2	0.9166
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	21.0	0.9344

Compare expression of checked genes

Lus10005474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.