Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04380 476 / 1e-165 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G04050 342 / 6e-110 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G43990 335 / 1e-107 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G73100 124 / 3e-30 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G23740 118 / 6e-28 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT5G04940 116 / 2e-27 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G22740 109 / 3e-25 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 104 / 2e-23 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT3G03750 101 / 2e-23 SUVR3, SDG20 SET domain protein 20 (.1.2) AT5G13960 96 / 8e-21 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012513 [exp] 395 / 2e-134 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 384 / 5e-131 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 355 / 4e-122 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024946 [exp] 351 / 3e-113 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 321 / 4e-101 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10027956 [exp] 273 / 7e-91 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008199 [exp] 181 / 2e-55 AT5G43990 53 / 4e-09 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10029470 [exp] 115 / 4e-27 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10040150 [exp] 113 / 2e-26 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048100 [exp] 470 / 1e-160 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 400 / 2e-134 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G257400 [exp] 389 / 4e-127 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.014G192500 [exp] 385 / 2e-125 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.003G188700 [exp] 119 / 1e-28 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.007G033000 [exp] 117 / 8e-28 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.001G036800 [exp] 117 / 1e-27 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.005G129800 [exp] 116 / 2e-27 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G083100 [exp] 115 / 4e-27 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.016G025300 [exp] 111 / 7e-26 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain CL0214 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10005476 pacid=23182563 polypeptide=Lus10005476 locus=Lus10005476.g ID=Lus10005476.BGIv1.0 annot-version=v1.0 ATGGGAAGGGAAAGAGCTAGAAATGCACTTCGAGCCACAAAAGCTATGGGTTTACCTTCTAAAGAGGTGAAGAAAGTGCTGTTGAAGTTGCTGGAGACGT TTGATAAGAACTGGGACATGATTGAAGATGATGGCTACCAACTACTCGTGGACAGTTACTTTGAATCATTGGAGGAAACTAAAGTGTGTAGTCATGGATC TGCAGAAACTAAACCAACCAATGGTTCTAATGGTGATGCTATGCAGTGGAAAATTCCCAGGACTGAAAAGGTTGAGCTGGTTAAAGACCAAGCTTCTTGT GCTGCAAACTTGAAAGTGGAAGGATCCAGCTCTTCAGCTGCTGTTACTGCTGCAGCTAGTTCAGTGGTCCATACAGCTTCTGGTAACTCTACACAAATCC TTGGACATGAACCATATGAAACCAGGAACATAAATCTTCGAAGGAACTATCATCGCTACATACCTGACATAACGAAAGGAGCTGAGAACGTCATGATTTC GTTAGTTGATGAATATGGCAGAGAGGAGGAGCTGCCGAAGTTCACCTACATACGGAACAACATCGTGCACCAAGACGCTAAGTTGCACATTTGCTTGGCG CGGATTTCCGACATGGACTGCTGCTTGAGTTGCGTGGGAGATTGTGTTGCACAACCGGTGCCTTGCGCATGTTCCCGTGAGACTGGTGGGGGATTAGCTT ATACGAAGCAAGGCCTTGTCAACGAAGAGTTTCTTGAAGCCTGTTTATCCATGGCTACCGATCCTGAAGAGCATCATATGTTTTTTTGCCAAGACTGTCA CTTGGCCAGGGTTAAGCGCCAGAATGTGCGTGCAAGATGTGATGGCCATTTGATCAGGAAGTTCATCAAAGAGTGCTGGGTCAAATGTGGATGTGAAATG AGCTGTGGAAATCGAGTTCTACAACGGGGTATCACTTGCAAATTACAGGTTTTCGCGACTCGTGAACGCAAAGGCTGGGGTCTGAGAACTCTCCAGGACT TGCCGAAGGGAGCTTTCGTTTGCGAGTATGCAGGGGAGATATTCACTAACACAGAGCTGGATAAGCGGAATATGCATAGTAAATGCAATGAAAAGCACAC ATATCCTGTTACGCTTGATGCTGACTGGGGTTCAGAAAGAACTCTGAATGACGATGAAGCACTTTGTTTGGATGCTACTCACTGTGGAAATGTAGCTAGA TTCATTAACCACAGATGTCACGATGGGAACTTAATGAACATCCCTGTCAAAGTGGAGACCCCCGATCGACACTATTACCATCTTGGTCTATTCACGAAAA GAGAAGTGAAGGCTCAGGAGGAGTTGACTTGGGACTATGGAATTGACTTCGACGATCATGGCCATCCGATCAAGGCGTTCAAATGTCTATGTGGAAGTAA ACTTTGCCGGGACAGGAAGCGAAAAAGGTCTGAACAATAA
AA sequence Show only first row Show all	>Lus10005476 pacid=23182563 polypeptide=Lus10005476 locus=Lus10005476.g ID=Lus10005476.BGIv1.0 annot-version=v1.0 MGRERARNALRATKAMGLPSKEVKKVLLKLLETFDKNWDMIEDDGYQLLVDSYFESLEETKVCSHGSAETKPTNGSNGDAMQWKIPRTEKVELVKDQASC AANLKVEGSSSSAAVTAAASSVVHTASGNSTQILGHEPYETRNINLRRNYHRYIPDITKGAENVMISLVDEYGREEELPKFTYIRNNIVHQDAKLHICLA RISDMDCCLSCVGDCVAQPVPCACSRETGGGLAYTKQGLVNEEFLEACLSMATDPEEHHMFFCQDCHLARVKRQNVRARCDGHLIRKFIKECWVKCGCEM SCGNRVLQRGITCKLQVFATRERKGWGLRTLQDLPKGAFVCEYAGEIFTNTELDKRNMHSKCNEKHTYPVTLDADWGSERTLNDDEALCLDATHCGNVAR FINHRCHDGNLMNIPVKVETPDRHYYHLGLFTKREVKAQEELTWDYGIDFDDHGHPIKAFKCLCGSKLCRDRKRKRSEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	2.0	0.9848
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	2.8	0.9848
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	3.5	0.9848
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	4.0	0.9848
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	5.0	0.9710
					Lus10014650 [exp]	6.5	0.9645
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	6.7	0.8809
					Lus10027457 [exp]	7.0	0.9630
					Lus10042250 [exp]	7.7	0.8062
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	8.0	0.9414

Compare expression of checked genes

Lus10005476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.