Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25770 171 / 3e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT4G32870 134 / 7e-41 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026898 [exp] 218 / 4e-74 AT2G25770 128 / 2e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10000573 [exp] 124 / 1e-36 AT4G32870 144 / 1e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10006042 [exp] 121 / 1e-35 AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028262 [exp] 76 / 6e-18 AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10040227 [exp] 77 / 9e-18 AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10040916 [exp] 39 / 0.0005 AT1G01360 265 / 1e-91 PYRABACTIN RESISTANCE 1-LIKE 9, regulatory component of ABA receptor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046100 [exp] 204 / 3e-68 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.006G236800 [exp] 142 / 5e-43 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237000 [exp] 140 / 6e-43 AT4G32870 180 / 9e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 134 / 2e-40 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G063900 [exp] 76 / 6e-18 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G193200 [exp] 52 / 3e-09 AT2G25770 59 / 4e-12 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10005477 pacid=23182564 polypeptide=Lus10005477 locus=Lus10005477.g ID=Lus10005477.BGIv1.0 annot-version=v1.0 ATGGCAGAAGAAGCCCAAACCAAATGGAATGGAAAGGTCCGGGCAAACGTAAAGAGAGCCAGCGCCGACCAGATATGGACGCTCTTCACAGATTTCTTCA ACATTCACAGATGGTTCCCAACCCTTCCATCCAGCTACGGAATCCACGGCACCAATGGCCAACCGGGCTGCATCCGCTACTGCTCGGGCTTCACCCTTCC CTCTACCCAGCTTCTTAGCTGGTCCAAGGAGAGATTGACCGCCGTCGATCACTCCCGCCGATGTCTCACCTACGAGATTGTCGACTGCAACATCGGATTC AAGTCCTATACATCAACAGTCCAGATTTTTCCGGGTGATGATGATGATGGCCAAGGATGTTTGATCGAGTGGGGGTTCACGGTAGATCCCGTGGAAGGAT GGGTACTGGATGTTCTGGTGGAGAAGTATGAAACGGTGTTGAATGCTGCAGCCCGCAAAATGGAGGAGGAGGTCATTGGATCCATTTGA
AA sequence Show only first row Show all	>Lus10005477 pacid=23182564 polypeptide=Lus10005477 locus=Lus10005477.g ID=Lus10005477.BGIv1.0 annot-version=v1.0 MAEEAQTKWNGKVRANVKRASADQIWTLFTDFFNIHRWFPTLPSSYGIHGTNGQPGCIRYCSGFTLPSTQLLSWSKERLTAVDHSRRCLTYEIVDCNIGF KSYTSTVQIFPGDDDDGQGCLIEWGFTVDPVEGWVLDVLVEKYETVLNAAARKMEEEVIGSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10005477 [exp]	0	1
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	8.2	0.6803
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	23.3	0.6576
					Lus10017454 [exp]	30.9	0.6422
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	44.0	0.6033
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011882 [exp]	52.9	0.6248
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	55.4	0.6175
AT5G37790			Protein kinase superfamily pro...		Lus10009125 [exp]	104.4	0.5551
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	116.0	0.5601
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10038516 [exp]	174.0	0.5183
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	225.6	0.5176

Compare expression of checked genes

Lus10005477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.