Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 81 / 2e-18 unknown protein AT4G32860 69 / 3e-14 unknown protein AT3G16330 69 / 7e-14 unknown protein AT4G29110 60 / 7e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006040 [exp] 360 / 5e-127 AT1G52140 78 / 2e-17 unknown protein Lus10034944 [exp] 48 / 6e-07 AT1G52140 100 / 3e-27 unknown protein Lus10012967 [exp] 45 / 1e-05 AT1G52140 105 / 5e-29 unknown protein Lus10025828 [exp] 44 / 4e-05 AT1G52140 138 / 8e-41 unknown protein Lus10038274 [exp] 44 / 5e-05 AT3G16330 124 / 2e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046500 [exp] 116 / 4e-32 AT1G52140 94 / 1e-23 unknown protein Potri.006G236700 [exp] 110 / 7e-30 AT4G32860 94 / 4e-24 unknown protein Potri.018G086500 [exp] 97 / 1e-24 AT4G29110 139 / 3e-41 unknown protein Potri.001G188900 [exp] 72 / 5e-15 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 54 / 1e-08 AT1G52140 129 / 1e-37 unknown protein Potri.014G139900 [exp] 41 / 0.0003 AT1G52140 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005478 pacid=23182552 polypeptide=Lus10005478 locus=Lus10005478.g ID=Lus10005478.BGIv1.0 annot-version=v1.0 ATGGAGCGCACCACTCCTTTCAGTTCTCCGCCATTGATGGTGATTAGCAAGAACAAGCTTCAAAAACTCGTCCGTTTCGCTTTAGTAATGATACAGAAGG GCGTCTCCAAGAGCAAGCTGGCCCTGGATCTCCACCTCATCATGAAGCGTGGCAAGGACCTCATGTCTCAACACCACATCTCCGCCACCTGTCGTCCCGA CGACCCTGACACGTCCTTCTTGTCCCCAATCAGCTGTGGCACCGGCGCCCACGTCGATGTCCGCCTCTCCTACGTGTCACCTAGGGACTACCAGTTCAGC TGTACTAACACCCCTTCCTCCTCTGCCCTCGGCCGAAACCGCCGAAAACGGAGGAAACCCTACCCTCGTTACAACATGCGCCATTATGCCTCTCAGCAGT ACTCTCAATACCACTACAATTACTACAGGCCACAACTACGTTCCCACGTGGCTGCCATATCACATGGTGACGTGGAGGAGGACTGTTATAATTATGCACC GACGTCGACGGTGGGAGAGTGCTCCGAGTACTCGTCGGCGGGCGGGGAGTCGAGGAGCCCTCTAGTGAGACAGGTGAGGATAACGGACTCCCCGTTCTCC GCCGCACACACGGCTGACGTAGATTGCCATGTGGACGTGGAGGCTGAAAGGTTTATTCAGAAGTTCTATACGGATCTAAGGTTGCAGAAATGGATGTCTG CATCTTCCTCCTATCATACCCAAAATGTTATTTACTGA
AA sequence Show only first row Show all	>Lus10005478 pacid=23182552 polypeptide=Lus10005478 locus=Lus10005478.g ID=Lus10005478.BGIv1.0 annot-version=v1.0 MERTTPFSSPPLMVISKNKLQKLVRFALVMIQKGVSKSKLALDLHLIMKRGKDLMSQHHISATCRPDDPDTSFLSPISCGTGAHVDVRLSYVSPRDYQFS CTNTPSSSALGRNRRKRRKPYPRYNMRHYASQQYSQYHYNYYRPQLRSHVAAISHGDVEEDCYNYAPTSTVGECSEYSSAGGESRSPLVRQVRITDSPFS AAHTADVDCHVDVEAERFIQKFYTDLRLQKWMSASSSYHTQNVIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52140			unknown protein		Lus10005478 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	4.9	0.9291
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031903 [exp]	6.5	0.9244
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	10.3	0.8846
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	13.2	0.9251
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	15.7	0.9234
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	15.8	0.9229
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	16.2	0.9222
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	22.5	0.8898
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	23.2	0.8998
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	24.7	0.8905

Compare expression of checked genes

Lus10005478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.