Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 1071 / 0 Protein kinase family protein (.1.2) AT3G13670 977 / 0 Protein kinase family protein (.1) AT3G03940 940 / 0 Protein kinase family protein (.1) AT5G18190 927 / 0 Protein kinase family protein (.1) AT3G03930 376 / 3e-127 protein kinase-related (.1) AT2G19470 195 / 7e-56 CKL5 casein kinase I-like 5 (.1) AT3G23340 194 / 1e-55 CKL10 casein kinase I-like 10 (.1) AT1G03930 195 / 2e-55 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G26100 194 / 4e-55 CKL1, CK1 casein kinase 1 (.1) AT5G57015 193 / 4e-55 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039203 [exp] 1014 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 1008 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10025827 [exp] 988 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10026214 [exp] 966 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10014152 [exp] 956 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 946 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 875 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10013737 [exp] 868 / 0 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 863 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046400 [exp] 1123 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 1122 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 1037 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 1019 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.001G009700 [exp] 1009 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 1009 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 952 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.018G065900 [exp] 198 / 2e-56 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 197 / 3e-56 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 195 / 2e-55 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005479 pacid=23182557 polypeptide=Lus10005479 locus=Lus10005479.g ID=Lus10005479.BGIv1.0 annot-version=v1.0 ATGGATCTGTACGACAGTGGAGGCCAGAGCGGGGACAAGCCTGTGCCAGAGGAGGAGGAGGCCACTACAGCTCCATTGCCGGAAAAGGTTACAGTTGGTG GCTCCCCAACGTATAAACTGGACAGAAAACTCGGGAAAGGAGGTTTCGGGCAAGTATATGTTGGTAGACGCATTGGTAGCGGCCCTGGAGCTGTAGAGGT CGCGTTGAAATTTGAGCATAGGAGCAGCAAAGGATGCAATTACGGACCTCCATATGAGTGGCAAGTTTACAACACACTTGGAGGTAGCCATGGTGTCCCA CGAGTCCACTTCAAAGGCCGGCAAGGTGACTACTATGTGATGTATACTACCACGCGAATGGTGAAGGAGAGCCCTGATTTATGGCAGGTTATGGATATAC TTGGACCGAGCTTGTGGGATGTTTGGAATAACAATTCGCACACGATGTCAATTGAGATGGTTGCCTGTATTGCAATTGAAGCAATCTCCATCTTAGAGAA GATGCACTCTAGAGGATATGTTCATGGAGACGTAAAACCTGAGAATTTTTTATTGGGACCTCCGGGGACTCCTGACGAGAAAAAGCTGTTTCTTGTTGAC CTTGGTCTAGCTGCCACGTGGCGTGATAATTCAACTGGTTTGCATGTTGATTACGATCAACGGCCTGATGTTTTCAGGGGAACAGTAAGGTATGCAAGTG TTCATGCTCATCTAGGTAGAACTGGTAGTAGGAGAGATGATTTGGAATCTCTAGCCTACACTCTTATTTTTCTTCTCCGTGGTCGACTTCCCTGGCAAGG ATATCAAGGGGAAAACAAAGGATTCCTTGTTTGCAAGAAGAAGATGGCTACATCCCCAGAAACTTTGTGCAGTTTTTGTCCTCAACCTTTTCAACAATTC GTTGAGCATGTGGTGAACTTAAAGTTTGATGAGGAGCCAAATTATGCCAAGTATATCACCCTATTTGATGGGATTATTGGCCCAAATCCTGACATTAGAC CGATCAACACTGACGGTGCTCAGAAGCTTATATATCAGGTTGGCCACAAGAGGGGGCGATTGACAATGGAAGGGGAAGATGATGAACAACCGAAGAAAAA GGTCCGGATGGGAATGCCTGCAACGCAATGGATCAGTGTCTATAATGCTCGTCGACCTATGAAACAAAGATATCACTACAATGTGGCTGATGCGAGGCTC TCGCAGCATATAGAGAAAGGAAATGAAGATGGGCTGTTTATAAGTAGTGTAGCTTCATGTTCAAATCTCTGGGCCCTCATTATGGATGCTGGCACTGGCT TCACTGATCAAGTTTATGAGCTTTCTCCTTATTTCCTCCACAAGGAATGGATTATGGAACAATGGGAGAAGAATTATTATATTAGTGCAGTTGCAGGAGC CAATAACGGTAGCTCGTTGGTTGTGATGTCCAAGGGCACACAATACTTACAGCAGTCATATAAAGTTAGTGATTCATTTCCTTTTAAATGGATCAATAAG AAATGGAGAGAGGGTTTCTATGTCACTGCCATGGCCACTGCTGGTAGTCGATGGGCTATTATTATGTCTCGTGGTGCAGGGTTTTCGGACCAGGTAGTCG AATTGGATTTTCTGTATCCCAGTGAGGGTATTCATCGCAGGTGGGATAGTGGATACCGAATAACTTCTGCAGCAGCAACATGGGACCAGGCTGCTTTAGT TCTTAGTGTGCCCAGACGAAAACCTGCAGATGAGACTCAGGAAACCCTACGAACATCTGCTTTCCCAAGCACACATGTAAAGGAAAAATGGGGAAAGAAT CTCTATATTGCATCAATTTGCTACGGCAGAACTGTCTCGTGA
AA sequence Show only first row Show all	>Lus10005479 pacid=23182557 polypeptide=Lus10005479 locus=Lus10005479.g ID=Lus10005479.BGIv1.0 annot-version=v1.0 MDLYDSGGQSGDKPVPEEEEATTAPLPEKVTVGGSPTYKLDRKLGKGGFGQVYVGRRIGSGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVP RVHFKGRQGDYYVMYTTTRMVKESPDLWQVMDILGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVD LGLAATWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCSFCPQPFQQF VEHVVNLKFDEEPNYAKYITLFDGIIGPNPDIRPINTDGAQKLIYQVGHKRGRLTMEGEDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADARL SQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTDQVYELSPYFLHKEWIMEQWEKNYYISAVAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINK KWREGFYVTAMATAGSRWAIIMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSAAATWDQAALVLSVPRRKPADETQETLRTSAFPSTHVKEKWGKN LYIASICYGRTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	0	1
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	2.0	0.8714
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Lus10020540 [exp]	7.1	0.8419
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	10.8	0.8685
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	11.0	0.8526
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	12.2	0.8586
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	12.4	0.8441
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	14.9	0.8600
AT1G71980			Protease-associated (PA) RING/...		Lus10016936 [exp]	15.5	0.8144
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	15.9	0.8145
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	17.5	0.8581

Compare expression of checked genes

Lus10005479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.