Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18380 115 / 9e-32 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) AT1G15215 104 / 2e-28 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017944 [exp] 124 / 2e-35 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10013684 [exp] 124 / 2e-35 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10025826 [exp] 115 / 4e-32 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10038276 [exp] 114 / 6e-32 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 104 / 1e-27 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10037564 [exp] 68 / 8e-15 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10006038 [exp] 41 / 2e-05 ND 40 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046200 [exp] 152 / 3e-47 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.001G189200 [exp] 124 / 2e-36 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.001G373300 [exp] 120 / 9e-34 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.011G097500 [exp] 119 / 1e-33 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005480 pacid=23182573 polypeptide=Lus10005480 locus=Lus10005480.g ID=Lus10005480.BGIv1.0 annot-version=v1.0 ATGATGGCTCGGCTCCGAACAAGAGAGAAACTCGTCTTCTCTGGCTTCACCAAGGCGGAGGAAGTTCATGTCAGATTTGAAGGATTTGGTGCGGAGGAAA ATGAATGGGTAAATGTAAGATATGGAGTGAGACAACGGTCTATCCCATTTGATCATTCAGAGTGTCACAAAGTGAAGGAGGGAGATCTAGTATGCTGCTT CCAGGAGAGGAAGGATTATGCAATGTATTACGATGCTCATGTGATAGAGATTCAAAGGAAAACACATGACATAAGGGGTTGCAGGTGCATTTTCAAGATA CTCTATGATCATGATAACATAGAGATGTCAGAAGCCGGGGAGAGCTTTCGGTATGAATGGCCGATCCAGCAAACTGTAGCCTAA
AA sequence Show only first row Show all	>Lus10005480 pacid=23182573 polypeptide=Lus10005480 locus=Lus10005480.g ID=Lus10005480.BGIv1.0 annot-version=v1.0 MMARLRTREKLVFSGFTKAEEVHVRFEGFGAEENEWVNVRYGVRQRSIPFDHSECHKVKEGDLVCCFQERKDYAMYYDAHVIEIQRKTHDIRGCRCIFKI LYDHDNIEMSEAGESFRYEWPIQQTVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	0	1
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	2.0	0.8630
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	2.4	0.8637
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	3.9	0.8599
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	4.5	0.8536
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	5.9	0.8494
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	6.0	0.8508
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	8.5	0.8373
					Lus10042562 [exp]	9.2	0.8571
AT1G74320			Protein kinase superfamily pro...		Lus10005386 [exp]	10.5	0.7836
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	11.6	0.8235

Compare expression of checked genes

Lus10005480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.