Plant FIBer expression Database

Lus10005481 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25740 523 / 0 ATP-dependent protease La (LON) domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019075
[exp]
44 / 0.0002 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Lus10015722
[exp]
43 / 0.0005 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G046700
[exp]
596 / 0 AT2G25740 574 / 0.0 ATP-dependent protease La (LON) domain protein (.1)
Potri.006G236400
[exp]
572 / 0 AT2G25740 587 / 0.0 ATP-dependent protease La (LON) domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0178 PUA PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence
>Lus10005481 pacid=23182565 polypeptide=Lus10005481 locus=Lus10005481.g ID=Lus10005481.BGIv1.0 annot-version=v1.0
ATGGACAACGACGCGATAATAGAGATGGAGAGACAGCAGATGGAGCAGATTCGAGAGCTTGATTTCGAGGAACTACAGGTCGAAGAAGTCGGCGACGATT
CCTCGGACGACGGCACTGATCCAGAATTAGCTGTTGATCATGATTTTATATTCCCTTTCACCGGCTACAGTGTCACGGTTTCTACGGAAGGATTTACTTT
CAACCTTGGTTTGGCTTCATTGCACTCGTATCTGGGAGAGGTGGAAGACACGCATAACAGGTTGGCCTTCTTGAATGGAGGTGCTACATTAACTCTTCCA
CTATTCTATCTTGAAGGGGTTGTTCTTTTCCCGGAGGCCACACTTCCTCTTAGGGTTGTTCAACGCAGTTTCACAATTGCCATTGAGAGAGCACTGACAC
AAGCGGATGCTGCTTACACCATAGGTGTGGTCCGTGCTCACAGGAGTCCTGACAACAGAAGATTAAAGTTAGCAAACATTGGGACAACTGCAGAGATCAG
GCAATACCGGCGTTTAGAGGATGGGACATTTAATGTTGTTACTCGTGGGCAGCAGCGTTTTCGTCTGAAACGTCTTTGGTTGGATGTGGATGGAGTGCCA
TGTGCAGAGGTTCAAATCATCGAGGAAGATTCACCATTAAGAACTCCCAAGGAGGCATTAGGGAAGTTGATGCCATTAAGTAAGTTGCAAAGCCAGCGAG
CCTCATGTTTTCCCGCAAGGCCATTGTTGCTTGTTCGTAGAGATGGTGGCAGTGATTCAGATGCAAGTTCAGACAGCAGTTTTGAGAGTGATCTTTCACT
AGCGGAAAAAAATATGCATATAACTGCAGTTGGGTCTTACCGTGACCATGATATGATTGATGATCACTCAAGTAGCAGTGATGATGACGCGTTTGTTTTT
GACCCAGAAATGGAATGTAGAATATCTCATGCGACCAACTTGGAATCTACATTGTCAGTTTACGCAGATGAGGAGGGTAAATGGTTTAGAAAACCTACGA
TGAAACATCAGGCTGCTGCCACTTCAAGCATGCAATTGGACAAAAAAGCAGAGAAAGTAAATTTCAAACCAAATTTGAGTCATCTGAGAAAATCTTCTGC
AGCATTTTGGCCCTATTGGGTGTATCAGATGTATGACTCCTATGAGCTTGCTCAAAGAGTTGCAGATATGTGGAAAAAGATAGTTGGTTCACCGAGTATG
GATGACATGGTGAGGAAGCCGGATTTGTTGTCATTTTATATTGCCAGTAAGATGCCTGTGTCTGAGTCTACAAGACAGGAGCTTCTAGAGATTGATGGCG
TTTCTTACAGACTGCATCGTGAAATCGAACTACTAGAACGATTCGATCTCATCCGATGTAAAATTTGTAAGACTGTAATTGCTAGGCGGAGTGACATGTT
GGTGATGTCTAGTGATGGTCCTCTTGGTGCCTATGTGAATCCGCATGGTTTTGTGCACGAAGTAATGACTCTCTTCAAAGCAAATGGATTGGCTCTCATC
GGGCGTGCAGTGGCAGAGTATAGCTGGTTTCCTGGGTACGAGTTTCTATTTATCCAATTATCATTGGTGATCGATCTTGGACTTGATTTATCTTTATTGA
ATGTGTCTGGGAAAAACGGAAGCAGGTATGCTTGGACAATTGCAAACTGTGCGGCATGCGAAACCCAAATGGGGTGGCGATTTACTGCAACAAAGAAGAA
ATTGAAGCCTCGATCATTCTGGGGGATACGAAGTGCTCAGGTTGCTGATGATGAGGATAATAGACATTGA
AA sequence
>Lus10005481 pacid=23182565 polypeptide=Lus10005481 locus=Lus10005481.g ID=Lus10005481.BGIv1.0 annot-version=v1.0
MDNDAIIEMERQQMEQIRELDFEELQVEEVGDDSSDDGTDPELAVDHDFIFPFTGYSVTVSTEGFTFNLGLASLHSYLGEVEDTHNRLAFLNGGATLTLP
LFYLEGVVLFPEATLPLRVVQRSFTIAIERALTQADAAYTIGVVRAHRSPDNRRLKLANIGTTAEIRQYRRLEDGTFNVVTRGQQRFRLKRLWLDVDGVP
CAEVQIIEEDSPLRTPKEALGKLMPLSKLQSQRASCFPARPLLLVRRDGGSDSDASSDSSFESDLSLAEKNMHITAVGSYRDHDMIDDHSSSSDDDAFVF
DPEMECRISHATNLESTLSVYADEEGKWFRKPTMKHQAAATSSMQLDKKAEKVNFKPNLSHLRKSSAAFWPYWVYQMYDSYELAQRVADMWKKIVGSPSM
DDMVRKPDLLSFYIASKMPVSESTRQELLEIDGVSYRLHREIELLERFDLIRCKICKTVIARRSDMLVMSSDGPLGAYVNPHGFVHEVMTLFKANGLALI
GRAVAEYSWFPGYEFLFIQLSLVIDLGLDLSLLNVSGKNGSRYAWTIANCAACETQMGWRFTATKKKLKPRSFWGIRSAQVADDEDNRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25740 ATP-dependent protease La (LON... Lus10005481
[exp]
0 1
AT3G26750 unknown protein Lus10021459
[exp]
5.2 0.7422
AT2G17020 F-box/RNI-like superfamily pro... Lus10023988
[exp]
13.1 0.7500
AT2G19800 MIOX2 myo-inositol oxygenase 2 (.1) Lus10041030
[exp]
14.2 0.7674
AT2G45620 Nucleotidyltransferase family ... Lus10009309
[exp]
18.0 0.7346
AT1G77250 RING/FYVE/PHD-type zinc finger... Lus10042764
[exp]
18.8 0.7421
AT3G44850 Protein kinase superfamily pro... Lus10005363
[exp]
20.7 0.7391
AT1G48380 HYP7, RHL1 HYPOCOTYL 7, root hair initiat... Lus10017988
[exp]
25.8 0.6833
AT5G22730 F-box/RNI-like/FBD-like domain... Lus10027471
[exp]
31.3 0.7191
AT5G10490 MSL2 MSCS-like 2 (.1.2.3) Lus10002652
[exp]
31.9 0.7417
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Lus10039795
[exp]
32.6 0.7286

Lus10005481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.