Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 40 / 0.0001 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 39 / 0.0004 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039393 [exp] 209 / 7e-69 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005495 [exp] 196 / 3e-64 AT1G17930 54 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10021566 [exp] 193 / 1e-62 AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033313 [exp] 193 / 7e-62 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004830 [exp] 182 / 1e-58 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10022091 [exp] 187 / 1e-55 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10005957 [exp] 169 / 1e-52 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10037814 [exp] 161 / 4e-52 ND 37 / 0.001 Lus10023763 [exp] 139 / 3e-43 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10005482 pacid=23182555 polypeptide=Lus10005482 locus=Lus10005482.g ID=Lus10005482.BGIv1.0 annot-version=v1.0 ATGGCAAGGAGCGTTTCTCTACTTCAGTCTTGGATTAACGATTACTTCCCTAGTACTCGTGCTGCTAGACTAGTGGCCCGGGAGAGGGGTGAGGTCGAGG CCTTAGTTGTGCGGTGGAGCAGTAGCGAGCAGTCAGATAGATCATACGAGTTCATGCACCGTCATCTGCTTGATGATATGACTGCACACGAAGTAACCTG GCTGCCATTTGGGCCACGTACCGAGGTAAAGGTTCTTGATTCGACGTTTCGTGGAGTGATTCGTTTCACGACGACAACAGAGTACTATGATCCGACACGT GTCGTTAGACAGTTCGGCTACACGCAGATGATTCTGGTGCTTATCCCTGCTCCTGTAAGGGAAATGAGGGCGGTTGAGCCTAATAGAGCATGGAATGACG AGGATTGGTCCCGACTGATGCCATTTTAG
AA sequence Show only first row Show all	>Lus10005482 pacid=23182555 polypeptide=Lus10005482 locus=Lus10005482.g ID=Lus10005482.BGIv1.0 annot-version=v1.0 MARSVSLLQSWINDYFPSTRAARLVARERGEVEALVVRWSSSEQSDRSYEFMHRHLLDDMTAHEVTWLPFGPRTEVKVLDSTFRGVIRFTTTTEYYDPTR VVRQFGYTQMILVLIPAPVREMRAVEPNRAWNDEDWSRLMPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	1.4	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	2.0	1.0000
					Lus10011636 [exp]	3.0	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	3.5	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	3.9	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	4.2	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	4.6	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	4.9	1.0000
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	5.2	1.0000
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	5.5	1.0000

Compare expression of checked genes

Lus10005482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.