Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25880 764 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT5G11670 764 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT1G79750 763 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT2G19900 754 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT4G00570 331 / 2e-107 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT2G13560 231 / 5e-69 NAD-ME1 NAD-dependent malic enzyme 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005484 [exp] 845 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10011125 [exp] 783 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 780 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10043025 [exp] 764 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10037561 [exp] 764 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 763 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10025823 [exp] 752 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10034963 [exp] 575 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 549 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236500 [exp] 817 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G046600 [exp] 803 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.001G189700 [exp] 782 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G086700 [exp] 772 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 769 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G156000 [exp] 331 / 2e-107 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 319 / 7e-103 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.002G135300 [exp] 238 / 8e-72 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 235 / 2e-70 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10005483 pacid=23182571 polypeptide=Lus10005483 locus=Lus10005483.g ID=Lus10005483.BGIv1.0 annot-version=v1.0 ATGAGGGATCCAAGGCATAACAAAGGGACTGCATTCACTGACAAAGAGAGGGATGCTCATTACCTGAGAGGTCTTCTTCCTCCAGCTACCTTCTCTCAGG ACCTTCAGGTGAAAAGGTTGATGCATAACCTTCGCCAGTTTGAGGTTCCTCTCCAAAGATACATGGCTATGATGGATCTTCAGGAGAGGAATGAAAGGCT ATTCTACAAGCTCCTAATTGATAATGTTGAAGAACTTCTGCCAGTTGTGTATACTCCCACAGTTGGGGAGGCTTGCCAAAAATATGGCAGCATTTTCAGG CGTCCCCAGGGCCTATACATCAGTTTGAAAGAGAAGGGAAAGATTCTTGAAGTGTTGAAGAACTGGCCAGAGAGAAATATTCAAGTAATTGTTGTTACGG ATGGGGAGCGAATTCTTGGGCTTGGAGATCTTGGCTGCCAGTGCCTGCCAATTACGATTGACGTTGGTACAAATAATGAAAATCTGTTGAATGATGAGTT CTACATCGGACTTAAACAAAGGAGGGCAACAGGACAGGAGTATGCTGAACTTCTGGAAGAGTTCATGAGTGCAGTTAAGCAAAATTATGGGGAGAAAGTG TTGATACAGTTTGAAGACTTTGCAAATCATAATGCATTTGACCTCCTGGAAAGGTACAGGCAAAGCCATCTTGTTTTCAATGATGATATACAGATCAAAG CTCCCGTAGAAGAGACGAGGAAGAAGATTTGGCTGGTGGACTCGAAGGGGCTCATCGTCAGTTCTCGCAAGGAGTCCCTTCAGCATTTCAAGAAGCCCTG GGCTCATGGCCACGAACCTGTTAAGAATCTCCTGGATGCTGTTAAGGCAATCAAGCCAACTGTCCTGATAGGATCATCTGGAGCTGGGAAAACATTCACA AAGGAGGTTGTTGAAGCAATGGCCTCCTTCAACGAGAAACCCCTGATTCTTGCACTATCAAATCCCACTTCTCAATCAGAATGCACAGCTGAGGAAGCTT ACACATGGAGCCAGGGTCGTGCTATCTTTGCGAGTGGAAGTCCATTTGACCCAGTTGAGCACAAAGGAAAAGTAATGATGCCAGGACAGGCAAACAATGC TTACATATTCCCAGGATTTGGTCTCGGGCTGATAATGTCAGGGGCGATTCGTGTGCATGATGACTTGCTCTTGGCAGCCTCGGAAGCATTGGCTGCCCAG GTAGAAGAGGAGCATTACGAGAAGGGACTGATATACCCACCATTTACAAACATCAGGAAAATATCGGCAAACATTGCTGCAAAGGTTGCTGATAAGGCAT ATCAATTAGGTCTGGCGTCGCGTCTGCCTCGTCCTAAGGACTTGGTGAAGCATGCAGAGAGCTGCATGTACAGCCCCTTGTACAGAACTTATCGTTGA
AA sequence Show only first row Show all	>Lus10005483 pacid=23182571 polypeptide=Lus10005483 locus=Lus10005483.g ID=Lus10005483.BGIv1.0 annot-version=v1.0 MRDPRHNKGTAFTDKERDAHYLRGLLPPATFSQDLQVKRLMHNLRQFEVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR RPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNENLLNDEFYIGLKQRRATGQEYAELLEEFMSAVKQNYGEKV LIQFEDFANHNAFDLLERYRQSHLVFNDDIQIKAPVEETRKKIWLVDSKGLIVSSRKESLQHFKKPWAHGHEPVKNLLDAVKAIKPTVLIGSSGAGKTFT KEVVEAMASFNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEHKGKVMMPGQANNAYIFPGFGLGLIMSGAIRVHDDLLLAASEALAAQ VEEEHYEKGLIYPPFTNIRKISANIAAKVADKAYQLGLASRLPRPKDLVKHAESCMYSPLYRTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10005483 [exp]	0	1
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10005484 [exp]	1.0	0.8859
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	8.0	0.7351
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	13.6	0.6862
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	16.9	0.6457
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	19.1	0.6060
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	23.0	0.6793
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	23.2	0.7460
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	27.7	0.6797
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10003654 [exp]	37.5	0.6517
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	38.9	0.6617

Compare expression of checked genes

Lus10005483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.