Plant FIBer expression Database

Lus10005486 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20890 145 / 5e-44 unknown protein
AT1G76480 137 / 2e-40 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006035
[exp]
174 / 2e-54 AT1G76480 147 / 1e-43 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G234800
[exp]
166 / 3e-52 AT1G20890 174 / 4e-55 unknown protein
PFAM info
Representative CDS sequence
>Lus10005486 pacid=23182567 polypeptide=Lus10005486 locus=Lus10005486.g ID=Lus10005486.BGIv1.0 annot-version=v1.0
ATGGAGAGTTCTTGTCGCCTGTTAGTGATTCTTCGTCGTTCATTGCTTTGCCTCTCTGCTTTCAGCTGCATTGCTGGCTACCCAATTTTCACATATGGCA
ACTTCGTGGTTAACAACAATGTATTGATTCTTGGGAATGAATTGGTGAAGGAAACTCTTCCTTTACAAAAGGGTTCCCGCCTTTATGAACTGCAAGGCCT
CAAATCAAACTCTTGGTATGAAGTCAAGATATCTTATCCAGCTGCTATACCCGCTAGCTTCACTATACAACTCAAGAAGGATGTTTCTGATTTGGGGTCC
AATCGGAATAGAAGATTGCTAAATACAGAAAAACTGATTTTCAAGGCTGATAGTTTCAATGGCAGTCAGCAGAACAAGCTGTATGTCTTGGTGTCTGTAC
AGCCTGAGGGAGTTGTTGCCATACCGAACGTACAGGAGAGGCAAGCAATCATCTTCAACATAGGTAGGTCACGTGTTGTCAAAGTTTCTGAAATAAACTC
ATTTAGTCATTCACTTTTGAACTCTGCTAAGTTGTTAGCGTGCATTAATATCTTCAGATTCCCACGCAAGCAGCAAGCCTTGATGAACTTTGATGAGAAC
CATTGA
AA sequence
>Lus10005486 pacid=23182567 polypeptide=Lus10005486 locus=Lus10005486.g ID=Lus10005486.BGIv1.0 annot-version=v1.0
MESSCRLLVILRRSLLCLSAFSCIAGYPIFTYGNFVVNNNVLILGNELVKETLPLQKGSRLYELQGLKSNSWYEVKISYPAAIPASFTIQLKKDVSDLGS
NRNRRLLNTEKLIFKADSFNGSQQNKLYVLVSVQPEGVVAIPNVQERQAIIFNIGRSRVVKVSEINSFSHSLLNSAKLLACINIFRFPRKQQALMNFDEN
H

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G20890 unknown protein Lus10005486
[exp]
0 1
AT1G19920 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1,... Lus10033158
[exp]
4.4 0.8677
AT3G44160 Outer membrane OMP85 family pr... Lus10013360
[exp]
7.5 0.8450
AT1G71260 WHY2, ATWHY2 WHIRLY 2 (.1) Lus10035067
[exp]
9.4 0.8119
AT3G10690 GYRA DNA GYRASE A (.1) Lus10028879
[exp]
10.3 0.8639
AT3G02060 DEAD/DEAH box helicase, putati... Lus10012587
[exp]
15.3 0.8405
AT2G31170 FIONA, SYCOARAT... cysteinyl t-RNA synthetase, FI... Lus10001921
[exp]
16.5 0.8304
AT3G61780 EMB1703 embryo defective 1703 (.1) Lus10004004
[exp]
19.1 0.8243
AT3G01810 unknown protein Lus10041590
[exp]
20.7 0.8247
AT3G19740 P-loop containing nucleoside t... Lus10017405
[exp]
22.8 0.8276
AT5G03420 5'-AMP-activated protein kinas... Lus10023003
[exp]
24.0 0.8431

Lus10005486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.