Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32830 545 / 0 ATAUR1 ataurora1 (.1) AT2G25880 539 / 0 ATAUR2 ataurora2 (.1.2) AT2G45490 384 / 6e-135 ATAUR3 ataurora3 (.1) AT5G10930 179 / 7e-53 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT1G30270 177 / 7e-52 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 177 / 7e-52 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT4G04720 178 / 8e-52 CPK21 calcium-dependent protein kinase 21 (.1) AT5G19360 175 / 1e-50 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 175 / 1e-50 CPK17 calcium-dependent protein kinase 17 (.1) AT5G21326 172 / 2e-50 Ca2+regulated serine-threonine protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006033 [exp] 515 / 0 AT4G32830 488 / 2e-175 ataurora1 (.1) Lus10020580 [exp] 377 / 2e-132 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 334 / 1e-115 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10042816 [exp] 181 / 2e-53 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 179 / 6e-53 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10008958 [exp] 178 / 6e-52 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 178 / 3e-51 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10009947 [exp] 175 / 2e-50 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10034212 [exp] 170 / 1e-49 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235000 [exp] 551 / 0 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.018G057700 [exp] 543 / 0 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.006G080500 [exp] 392 / 3e-138 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.006G062800 [exp] 177 / 4e-52 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.011G003400 [exp] 177 / 2e-51 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.017G048400 [exp] 176 / 2e-51 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.002G177900 [exp] 174 / 4e-51 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.019G048800 [exp] 173 / 8e-51 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G119200 [exp] 174 / 9e-51 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.016G066700 [exp] 176 / 2e-50 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005487 pacid=23182549 polypeptide=Lus10005487 locus=Lus10005487.g ID=Lus10005487.BGIv1.0 annot-version=v1.0 ATGGCGATTGCTCCTCCTGACACCCAATCCCAGCATCAGCACCACCAGGATCCTTCTCCTGAAGAATCGGCTATGTCAGGGGATAACAACAACAACAAGG CCAGGAGATGGACGCTCAACGATTTCGACATCGGCAAGCCTCTCGGCCGCGGAAAATTCGGCCATGTCTACCTCGCTCGTGAAAAGAGGAGCAATCACGT TGTGGCCCTGAAAGTGCTGTTCAAGAGCCAACTCCAACAATCGCAGGTGGAGCATCAACTTCGCCGTGAAGTTGAAATTCAAAGCCATCTCCGCCATCCC AATATCCTCCGTCTCTATGGTTACTTTTACGATCAGAAGCGAGTTTACTTGATATTGGAGTATGCAGCCAAAGGTGAACTCTACAAAGAGCTTCAGAAGT GTAAATACTTCAGTGAACGGCGTGCAGCTACTTATGTAGCGTCATTGGCCCGGGCTCTGATTTATTGCCATGGGAAGCATGTCATCCATAGAGATATTAA ACCAGAGAACCTGTTGGTTGGTGCCCAGGGAGAGCTAAAGATTGCGGATTTTGGTTGGTCCGTGCACACATTCAACCGGAGGAGGACGATGTGTGGTACA TTGGACTACCTGCCACCTGAAATGGTTGAAAGTGTTGAACATGATGCTAGTGTTGATATTTGGAGCCTGGGTGTGTTGTGTTATGAGTTCCTGTACGGAG TGCCCCCTTTTGAGGCAAGGGAACACTCCGACACATACAGAAGGATTGTGCAAGTGGACCTCAAATTTCCTCCTAAGCCTATTGTATCTGCCTCTGCAAA GGATCTTATAAGTCAGATGCTGGTCAAGGATTGTGCACAGCGGCTGCCGTTACATAAGCTGCTGGAGCACCCATGGGTAATTCAGAATGCTGACCCCTCT GGTGTCTACACGGGTTGA
AA sequence Show only first row Show all	>Lus10005487 pacid=23182549 polypeptide=Lus10005487 locus=Lus10005487.g ID=Lus10005487.BGIv1.0 annot-version=v1.0 MAIAPPDTQSQHQHHQDPSPEESAMSGDNNNNKARRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHVVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHP NILRLYGYFYDQKRVYLILEYAAKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGT LDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAREHSDTYRRIVQVDLKFPPKPIVSASAKDLISQMLVKDCAQRLPLHKLLEHPWVIQNADPS GVYTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	0	1
AT3G03130			unknown protein		Lus10009977 [exp]	1.4	0.9745
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	2.0	0.9645
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	2.4	0.9586
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	3.5	0.9721
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	3.5	0.9518
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	4.2	0.9704
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	4.5	0.9399
AT3G12870			unknown protein		Lus10031776 [exp]	6.3	0.9573
AT5G17160			unknown protein		Lus10038036 [exp]	6.7	0.9604
AT3G01840			Protein kinase superfamily pro...		Lus10022345 [exp]	6.9	0.9360

Compare expression of checked genes

Lus10005487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.