Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32840 737 / 0 PFK6 phosphofructokinase 6 (.1) AT4G26270 735 / 0 PFK3 phosphofructokinase 3 (.1) AT5G56630 719 / 0 PFK7 phosphofructokinase 7 (.1) AT4G29220 717 / 0 PFK1 phosphofructokinase 1 (.1) AT5G61580 681 / 0 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 464 / 6e-161 PFK2 phosphofructokinase 2 (.1) AT2G22480 397 / 5e-133 PFK5 phosphofructokinase 5 (.1) AT1G20950 68 / 6e-12 Phosphofructokinase family protein (.1) AT1G76550 67 / 2e-11 Phosphofructokinase family protein (.1) AT4G04040 66 / 4e-11 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006032 [exp] 834 / 0 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 738 / 0 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 734 / 0 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 711 / 0 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 498 / 8e-174 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 387 / 2e-129 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 384 / 5e-128 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 197 / 1e-60 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10025167 [exp] 71 / 1e-12 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 745 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 734 / 0 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 699 / 0 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 501 / 4e-175 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 371 / 2e-127 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.006G235066 [exp] 356 / 1e-121 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 362 / 9e-120 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.001G079501 [exp] 204 / 5e-63 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 73 / 2e-13 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.001G079450 [exp] 63 / 2e-12 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10005488 pacid=23182548 polypeptide=Lus10005488 locus=Lus10005488.g ID=Lus10005488.BGIv1.0 annot-version=v1.0 ATGTTCTTTTCACCGACTACTAGTACCAACCATTCCCGCATTCTTCTCAGTTTCCCTCCGCCACCTCCTCCCTCCCCTCGCTGCTCCCGCGATCATCTTC CAATCCTCCTCTGTAATAAAAACCACCCATCCAGCCCATCCTTTCTTCAGCTCAAACCTGAAACACCCACAACTACGACAATGGGGGACTATGCTGCTAC TGCTCATATCCCTGCTGCCGCCGCTTCAAATATGGAGCAAGGGGAAGGAGGCTATTTACTCGAAGACGTTCCTCACCTAACTGACTACCTCCCTCTTCTT CTCTCCACTTACCCAAATCCCTTGCAAGTCAATCCCGCTTACTCTGTTGTCAAGCAATACTTCGTCGATGTGGATGACACCGTCGCTCAAAAGGTTGTGG TTCATAAGAATGGACCTAGAGGAACCCACTTCCGTCGAGCTGGACCTCGCCAAAAGGTGTTCTTTAAGCCTGATGAAGTCCATGCTTGCATTGTCACCTG TGGTGGTTTGTGCCCTGGCCTGAACACCGTCATCAGGGAGATTGTTTGCGGCCTTCATTACATGTATGGTGCCACCAGAATCATTGGTATTGACGGAGGC TACAGGGGATTCTATTCCAAAAATACTATTGATTTGACTCCCAAGGTTGTCAATGACATCCATAAACGTGGGGGTACACTCCTCGGGACATCCAGAGGCG GACATGACACATCCAAGATAGTTGACAGCATTGAGGATCGTGGGATTAATCAGGTCTACATCATTGGTGGCGATGGAACTCAAAAGGGAGCAGCAGCCAT TTACGAGGAAATCAGGCGCCGCGGTCTTAAAGTTTCAGTTGCTGGAATACCTAAAACCATTGACAATGACATTCCGGTTATTGACAAGTCATTTGGTTTT GATACTGCGGTTGAGGAGGCACAGCGTGCTATCAATGCAGCACATGTTGAAGCTGCGAGTACTGAAAATGGTATTGGTCTTGTGAAACTAATGGGGCGAG ATAGTGGTTTCATTGCTATGTACGCTACTCTTGCCAGCCGAGACGTGGATTGTTGTTTGATTCCGGAGTCGCCTTTCTATTTAGAAGGAAAAGGTGGAGT TTTTGAGTTCATAAAAAAACGGCTGAAAGAAAATGGGCACATGGTCATTGTAATTGCTGAAGGAGCAGGGCAAGATCTTCTTACAGAAAGCCTGCAGTCC ATGGATCAGCAAGATGCTTCAGGAAACAAGCTATATCAAGATGTTGGATATTGGATATCTGGGAAGATCAAGGATCATTTTGCAAAAGAACACAAGATGG CCATCAATCTCAAATACATAGATCCTACATACATGATCCGGGCAATTCCAGGTAATGCATCTGATAATGTATACTGCACACTCCTTGCACAGAGTGCAGT ACATGGAGCAATGGCAGGATATACAGGCTTCACTGTTGGACCTGTGAACGGACGACATGCTTACATCCCCTTTAATCGCATCACTGAGAAGCAGAACAAG GTGGTGATCACAGACAGGATGTGGGCTAGGCTTTTATCCTCAACTAACCAACCTAGCTTTTTGTGA
AA sequence Show only first row Show all	>Lus10005488 pacid=23182548 polypeptide=Lus10005488 locus=Lus10005488.g ID=Lus10005488.BGIv1.0 annot-version=v1.0 MFFSPTTSTNHSRILLSFPPPPPPSPRCSRDHLPILLCNKNHPSSPSFLQLKPETPTTTTMGDYAATAHIPAAAASNMEQGEGGYLLEDVPHLTDYLPLL LSTYPNPLQVNPAYSVVKQYFVDVDDTVAQKVVVHKNGPRGTHFRRAGPRQKVFFKPDEVHACIVTCGGLCPGLNTVIREIVCGLHYMYGATRIIGIDGG YRGFYSKNTIDLTPKVVNDIHKRGGTLLGTSRGGHDTSKIVDSIEDRGINQVYIIGGDGTQKGAAAIYEEIRRRGLKVSVAGIPKTIDNDIPVIDKSFGF DTAVEEAQRAINAAHVEAASTENGIGLVKLMGRDSGFIAMYATLASRDVDCCLIPESPFYLEGKGGVFEFIKKRLKENGHMVIVIAEGAGQDLLTESLQS MDQQDASGNKLYQDVGYWISGKIKDHFAKEHKMAINLKYIDPTYMIRAIPGNASDNVYCTLLAQSAVHGAMAGYTGFTVGPVNGRHAYIPFNRITEKQNK VVITDRMWARLLSSTNQPSFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	2.2	0.8158
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	2.8	0.8098
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	4.9	0.7812
AT5G42200			RING/U-box superfamily protein...		Lus10017253 [exp]	5.2	0.7705
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	5.3	0.7892
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	7.7	0.7835
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031368 [exp]	10.4	0.7136
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	13.5	0.7926
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	16.9	0.7257
AT4G39050			Kinesin motor family protein (...		Lus10017893 [exp]	17.6	0.6668

Compare expression of checked genes

Lus10005488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.