Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25870 652 / 0 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006031 [exp] 864 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10038133 [exp] 710 / 0 AT2G25870 671 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10005169 [exp] 630 / 0 AT2G25870 614 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057500 [exp] 720 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G235301 [exp] 0 / 1 AT2G25870 0 / 1 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02130 [flax] [poplar] UPF0054 Uncharacterized protein family UPF0054 CL0137 [flax] [poplar] HAD PF08282 [flax] [poplar] Hydrolase_3 haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10005489 pacid=23182550 polypeptide=Lus10005489 locus=Lus10005489.g ID=Lus10005489.BGIv1.0 annot-version=v1.0 ATGCTCCCTCGCGTCGCTCCGCTTCTTCGCTCCTCCTCAGCCGCCGCAATGGCGCGCCCGATTTCTCGCGCCGCCCTTCTCCCCAATGGGTTTTCCATCG CCACTCCAACGATTGGCCTCCCTGACGATTCTGAAATCTTGAGTATCGCTGAGTTGCTTCGCCTTAATGTGCCAATGGCAATAAAGTTGGTTCTGGACGG CTTGAAAGACTCTCCCTACAAGACTAGAGATACAACTATCACTGATGTTGGCGGGTTTGAGAGTATCGAGTTGTCCGTGATGCTCTGTAATGACAACTTC ATAAGGAAGCTCAATAAAGAATGGAGAGATGAAGACCATGCTACTGATGTTCTCTCTATGTCACAGCATGTTCCTCAACTTCACCTCCCTGTTCTTATGC TTGGCGACATTGTAGTTTCTGTGGAGACAGCTGCACGTCAAGCTGAAGAAAGAGGTCATACACTTGTGGATGAGATTCGCATTCTCCTGGTCCACGGTTT GTTGCATCTTTTCGGATTTGATCACGAGATGAGTGAAGAAGCTGAATCTGAAATGGAGAAAGAGGAGCAAGTTCTTCTCAAGAGTCTTGGGTGGAGAGGA AAAGGACTTATTCAAAGTGCATGTGATGGAAGTTCTAAAACTGATAATGATTCAGAAACTTTGGATGACAGGAAGAAAGAAGGAAGCCTTCGGTTCTACA AACCGAAATTCAAGTATATCTTCTGCGACATGGATGGAACTTTGCTTAACAGCCAAAGTCAAGTTTCAACAACAAATGCTACTGCGTTGAAAGAAGCTTT ATCAAGAGGAGTGAAGGTAGTGATTGCAACAGGAAAGGCTCGTCCAGCTGTGATAAGTATCTTGAAGACAGTAGGCCTAGCTGGTACAGATGGTATTATT TCAGAGTCGTCCCCTGGTGTTTTCTTGCAGGGGTCACTTGTGTATGGTAGACAGGGACGCGAGATCTTAAGAAGAAACTTAGATCCAAGCGTATGCAAGG AGGTGTGCATGTATTCTTTGGAGCATAAGATTCCTCTTGTTTCATTCAGCAATGATCGTTGCTTAACACTGTTTAATCATCCCCTTGTTGATACATTGCA TACAGTTTACCAAACACCGCAGGCTGAAGTCATGCCATCAGTAAAGCATCTCGTGGATGCAGCTGACATACAGAAACTGTTATTTATAGATGATGCTGAT AGAATAGCCGCGGAACTGAGGCCATACTGGTCGAAGGCAATAGGAAGTCGTGGCAATATTGTCCAAGCTGTCCCACATATGCTTGAGATTGTGCCCGTGG GAACATTGAAAGGGAGTGGGGTTGAAATTCTCCTTGATCATTTAGGGGCGAAACCAGAGGAGATAATGGCCATAGGAGACGGAGAGAATGATATCGAGAT GCTGGAATTGGCTGGTCTTGGAATTGCTCTCAGCAATGGTGCGGAGAAGACAAAAGCCGTGGCCAACATAATAGGTAGCAGTAATGATGAAGACGGGGTA GCTGATGCTATATATCGGTATGCGTTTTGA
AA sequence Show only first row Show all	>Lus10005489 pacid=23182550 polypeptide=Lus10005489 locus=Lus10005489.g ID=Lus10005489.BGIv1.0 annot-version=v1.0 MLPRVAPLLRSSSAAAMARPISRAALLPNGFSIATPTIGLPDDSEILSIAELLRLNVPMAIKLVLDGLKDSPYKTRDTTITDVGGFESIELSVMLCNDNF IRKLNKEWRDEDHATDVLSMSQHVPQLHLPVLMLGDIVVSVETAARQAEERGHTLVDEIRILLVHGLLHLFGFDHEMSEEAESEMEKEEQVLLKSLGWRG KGLIQSACDGSSKTDNDSETLDDRKKEGSLRFYKPKFKYIFCDMDGTLLNSQSQVSTTNATALKEALSRGVKVVIATGKARPAVISILKTVGLAGTDGII SESSPGVFLQGSLVYGRQGREILRRNLDPSVCKEVCMYSLEHKIPLVSFSNDRCLTLFNHPLVDTLHTVYQTPQAEVMPSVKHLVDAADIQKLLFIDDAD RIAAELRPYWSKAIGSRGNIVQAVPHMLEIVPVGTLKGSGVEILLDHLGAKPEEIMAIGDGENDIEMLELAGLGIALSNGAEKTKAVANIIGSSNDEDGV ADAIYRYAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	0	1
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	2.2	0.9045
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	3.0	0.9121
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	4.6	0.8938
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	5.1	0.9099
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	6.5	0.8806
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	7.1	0.9093
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	10.0	0.8677
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	11.0	0.8923
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	11.0	0.8859
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	12.1	0.8728

Compare expression of checked genes

Lus10005489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.