Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32850 750 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT2G25850 739 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT1G17980 584 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT3G06560 245 / 1e-71 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006029 [exp] 1242 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 695 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10006844 [exp] 694 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10021643 [exp] 615 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 606 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 594 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 590 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235400 [exp] 858 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.018G057200 [exp] 846 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.015G043200 [exp] 641 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.008G102500 [exp] 258 / 2e-76 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04926 [flax] [poplar] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain CL0260 [flax] [poplar] PF04928 [flax] [poplar] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Lus10005490 pacid=23182551 polypeptide=Lus10005490 locus=Lus10005490.g ID=Lus10005490.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCGCAAGCTCCTACCGCAGCCAAGAAAAAATACGGCATTACCAATCCAATCTCTCTTGCTGGCCCCACCGACGCTGATCTTCACCGCAATT CTGATTTGGAGAAGTTTTTGGTTGATTCTGGGCTATACGAGGCCAAAGAAGAAACCGATAAGAGACAAGAGGTTCTTGGCAGGCTTGATCAGATTGTCAA AGCTTGGGTCAAGCAGTTGACACGCCAGAAGGGTTACACGGATCAGATGGTTGAAGAAGCAAATGCAGTTATTTTCACTTTCGGGTCATACCGTTTGGGA GTACATGGCCCTGGTGCAGACGTGGATACATTGTGCGTGGGCCCGTCTTATATTAATCGCGAGGAAGATTTCTTCATTATTTTACATGATTTGTTGGCTG ACATGGAGGAAGTCACTGAGCTTCAACCAGTTCCAGATGCTCACGTACCTGTAATGAAATTTAAGTTCTTGGGGATATCGATTGATCTACTTTATGCAAG TATTTCTCTCTTGGTTGTTCCGGAAGATCTGGACATCTCTAGTGGATCTGTGTTGCATGAGGTGGATGAGCAAACTGTTCGTAGCCTTAATGGGTGCAGA GTTGCAGATCAAATTCTCAAGCTTGTTCCCAATGTTGAGCATTTCCGGACTGCTCTCAGATGTTTGAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCTA ATGTACATGGCCCTGGTGCAGACGTGGATACATTGTGCGTGGGCCCGTCTTATATTAATCGCGAGGAAGATTTCTTCATTATTTTACATGATTTGTTGGC TGACATGGAGGAAGTCACTGAGCTTCAACCAGTTCCAGATGCTCACGTACCTGTAATGAAATTTAAGTTCTTGGGGATATCGATTGATCTACTTTATGCA AGTATTTCTCTCTTGGTTGTTCCGGAAGACCTGGACATCTCTAATGGATCTGTGTTGCATGAGGTTGATGAGCAAACTGTTCGCAGCCTTAATGGGTGCA GAGTTGCAGATCAAATTCTCAAGCTTGTTCCCAATGTTGAGCATTTCCGGACTGCTCTCAGATGTTTGAAGTTTTGGGCTAAAATGCGTGGTGTTTATTC TAATGTCACTGGTTTCCTCGGTGGTGTGAATTGGGCTCTTCTTGTTGCCCGGGTGTGCCAGCTTTATCCCAATGCAATTCCTAGCATGCTAGTTTCTCGG TTTTTCAGAGTATATACTCAGTGGCGTTGGCCAAATCCTGTGATGTTGTGTTCAATAGAAGAAGATGAACTTGGGTTTCCAATATGGGACCCTCGCAAAA ACCCACGAGACCGCTTTCATCATATGCCTATAATAACTCCAGCTTATCCTTGTATGAATTCTAGCTATAACGTTTCAATAAGTACTCTACGGGTTATGAT GGAGCAATTTCAGTTTGGTAACAGGACATGCGAGGAGATTGAGCTGAGTAAGGCTCTGTGGGGTGCACTATTTGAGCCTTACCTATTTTTTGAGTCATAC AAAAACTACCTCCAAGTTGATATCATTGCAGCAGATACAGATGATTTGTTATCCTGGAAAGGTTGGGTTGAGTCACGGCTGAGACAACTTACGTTGAAAA TAGAGCGAGATACAACTGGCATGCTGCAGTGCCATCCTTATCCATACGAGTATATGGACTTGTCTAGGCAATGCCCACATTGTGCTTTCTTCATGGGCTT GCAGAGGAAAGAGGGAATAAGTGGTCAAGAAGGCCAACAGTTTGATATAAGGGGAACAGTCGATGAATTCAGGCAAGAGATAAACATGTACATGTTTTGG AAACCAGGAATGGAAGTTTATGTTTCTCATGTTCGCAGAAAGCAGCTCCCTACTTTTGTTTTTCCCGAAGGACATAGACGCTCTCGACCGTCAAGGCATT TAAGCCTACTTGATGGAAAAGCTAATGATGATGTTGGAAAGTCCGGGTCTGGGTCCATTGAAAGACGTCTGAAGAGAAAAAATGACGATGGAATTGCAGA TGAAAGACGAGATAAGCGTTCCTCAATGAGCCCACAGAGAATGATGTCTGTTTCTCCAGAAAGCTATACTAATAGCTTATCTGATGGGGCTAAATTGGGC TGTTCACCTCTTGGTGACATTGATAGGACTACCCGGGTGAGTTCATGTAGTGGGCAGGTCGATGGTGAGGTAGGAAATATTATGATGGGTGCGGAAGGTG GGTGTTCCCTAAGTAGAAGAGGTTCAATGGAGGAATGTAATTCGTCTTTGGCTATAAATGATCCAGAGCCAATGGAGTTCAAAGCTAAGCAGCAGCATTG TCCCGAGCCATGTGATAGGCCAGATTTTGCAACTGGAGGTATCCATTTGGCTGGATCCAGTGAATACAGAGTTGGGGAAGTTGGATCAGGTTTGAAAGAG GTTACTGCAAATGAATCTTCTGACGGACTCTTAAATTGGACAGGCGATGTTATCGAGATTGGAAGAGAACCAGTTGAGCAGTGTAATCAAAGAGCAGTTG TAGGACTCAGTGAAACTGTTGTGTGCTCGAGCTCCGGCAATCAGAAGCTAAACTGTGAGTGCAACACTGTGGTCGGGACAGCTGTGCAATCTCAAGATGG ATTGAGGTGCAAAGGCCGGGGACGAGGCTTGCTTTCACAACCCTTTATTTTTCATTTGCAAGTTGCGGTATCTTTAGGCTTTGATGTTTGGTTTCTCCCT CTGTATCAGGTTGAGTCTGAAATCAACAGCGTAAGAGAAGCCTGGATGAGCTAG
AA sequence Show only first row Show all	>Lus10005490 pacid=23182551 polypeptide=Lus10005490 locus=Lus10005490.g ID=Lus10005490.BGIv1.0 annot-version=v1.0 MVGSQAPTAAKKKYGITNPISLAGPTDADLHRNSDLEKFLVDSGLYEAKEETDKRQEVLGRLDQIVKAWVKQLTRQKGYTDQMVEEANAVIFTFGSYRLG VHGPGADVDTLCVGPSYINREEDFFIILHDLLADMEEVTELQPVPDAHVPVMKFKFLGISIDLLYASISLLVVPEDLDISSGSVLHEVDEQTVRSLNGCR VADQILKLVPNVEHFRTALRCLKFWAKRRGVYSNVHGPGADVDTLCVGPSYINREEDFFIILHDLLADMEEVTELQPVPDAHVPVMKFKFLGISIDLLYA SISLLVVPEDLDISNGSVLHEVDEQTVRSLNGCRVADQILKLVPNVEHFRTALRCLKFWAKMRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSR FFRVYTQWRWPNPVMLCSIEEDELGFPIWDPRKNPRDRFHHMPIITPAYPCMNSSYNVSISTLRVMMEQFQFGNRTCEEIELSKALWGALFEPYLFFESY KNYLQVDIIAADTDDLLSWKGWVESRLRQLTLKIERDTTGMLQCHPYPYEYMDLSRQCPHCAFFMGLQRKEGISGQEGQQFDIRGTVDEFRQEINMYMFW KPGMEVYVSHVRRKQLPTFVFPEGHRRSRPSRHLSLLDGKANDDVGKSGSGSIERRLKRKNDDGIADERRDKRSSMSPQRMMSVSPESYTNSLSDGAKLG CSPLGDIDRTTRVSSCSGQVDGEVGNIMMGAEGGCSLSRRGSMEECNSSLAINDPEPMEFKAKQQHCPEPCDRPDFATGGIHLAGSSEYRVGEVGSGLKE VTANESSDGLLNWTGDVIEIGREPVEQCNQRAVVGLSETVVCSSSGNQKLNCECNTVVGTAVQSQDGLRCKGRGRGLLSQPFIFHLQVAVSLGFDVWFLP LYQVESEINSVREAWMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	0	1
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	1.0	0.8209
AT3G04160			unknown protein		Lus10042519 [exp]	2.4	0.7917
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	3.5	0.7593
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	7.2	0.7397
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	7.7	0.7542
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	8.1	0.7548
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	9.9	0.7537
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	10.4	0.7292
AT1G47530			MATE efflux family protein (.1...		Lus10010035 [exp]	11.0	0.6987
AT3G25840			Protein kinase superfamily pro...		Lus10035031 [exp]	11.9	0.6637

Compare expression of checked genes

Lus10005490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.