Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 1017 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 632 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 604 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 591 / 0 HSL2 HAESA-like 2 (.1) AT5G65700 547 / 2e-178 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 518 / 2e-167 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 509 / 3e-164 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 502 / 1e-161 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 501 / 8e-161 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 491 / 6e-157 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006028 [exp] 1738 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10034978 [exp] 902 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 881 / 0 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10013968 [exp] 647 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 637 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 617 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10013562 [exp] 532 / 8e-173 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 531 / 1e-172 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 523 / 8e-169 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235800 [exp] 1200 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 1189 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 931 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 913 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 893 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 857 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 681 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 651 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 630 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 612 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005491 pacid=23182547 polypeptide=Lus10005491 locus=Lus10005491.g ID=Lus10005491.BGIv1.0 annot-version=v1.0 ATGTCCAAACTACCCCTCCACTCCCTCCCAACCCATTTCCCACTCCTCCTACTCCTCTTCCTCCTCGCCTTACCCTTTTCAGTAATTTCACAGGACCAAC GAGCCATCCTCCTCAACCTCAAGCAACAGCTTGGGGACCCTCCTCTACTCCACTCCTGGTCCTCCTCCTCCGCCGCCGCATCCGATCCATGCTCCTGGCC CGAAGTCAAATGCACCGCCGACGGCACTGTCACCGAGCTCTACCTCTCCAATAAGAACATCACCGTCCCCATTCCGCCAACTGTCTGCAACTTCCGAAAC CTAACCCTGCTAGACCTTTCCTGGAATTATATCCCCGGCGGCTTCCCCACGCTTCTCTACAACTGCTCCAGCCTCCAGTACCTCGACCTCTCTCAGAACT ACTTCGTCGGCCCTCTCCCTGCCGACGTCGACCGCCTCTCCTCTTCCCTCAGTTACATCGACGTCGGCGCCAACAATTTCTCCGGCGACATCCCGCCCTC GATCGGAAACCTAACTGAGCTCCGCACACTTCGCCTCTACCAGAACCAGTTCAATGGAACTTTCCCTAAGGAGATTGGGAACTTGGCCAACCTGGAATCG TTGGAGATGGCTTTCAACGAGTTTGTGCCTTCTCCGATTCCTCCCCAGTTCGGTAAGTTGAAGAATCTTAGTTACTTCTGGATGAGAAGCGCTAACCTGA TCGGGAAAATCCCGGAATGGTTCGCCGATCTTCCGAATCTCCAGCACCTGGATTTGGCGGCCAACCATTTGGAAGGTGGACTACTAGGTGGATTGTTGTC CCACCCGAATTTGCAAATCCTGTACCTCTTCCACAATCAATTGTCCGGTGAAATCCCTAAAAATGTGTCCGCGTTGAATTTGATCGAGATCGATGTTGGG ATGAACAGCCTCTCCGGCTCTGTTTCGGAAGATTTCGGGAAGCTGAAGAAGCTCGAAATCCTGAATCTATTTAACAACAAGTTATCCGGAGGCCTCCCTT CAAGTATCGCTCTACTTCCTGCTCTTAAGGAGATGAAGTTATTCACTAACAATTTCACCGGAGAATTGCCGACGGAGCTGGGGCTCCACTCCAAGCTCGA GATATTCGACATCGCGACCAACGGATTCAGCGGCCGGCTACCGGAGAATATCTGCGCTGGTGGGGTGCTAGAAGGGCTAGTAGCGTCTGAGAACAAGCTG AGCGGAGAGGTCCCTAAGTCCGTCGGAAATTGTCACCATCTGAAAACAATTCAGCTGTACGGCAACAATTTTTCTGGGGAATTGCCGCCTGGAGTTTGGA GGTTGGTTAACATGACTTACTTGATGCTGAGTGACAATTCATTTTCCGGCCCACTCCCGAGCGCAATAGCGTGGAATCTGTCGAGATTGGAGATTCACAA TAACAACTTCTCCGGACCGATCCCGAAAGGAGTCGCCGATTGGAAAGGATTGGTAGTGTTTAAGGCGAGTAACAATCAGCTCTCCGGCGAGATCCCCGTT GAATTGACCAGCCTTTCTAGGCTGATAACTTTGCTTCTGGATGGAAATCAGTTATCAGGAAAATTCCCGTCTCAAATCATCTCGTGGAAATCTCTTTCTT CTTTACATCTCTCGAGAAACAAGCTTTCCGGGCCGATTCCGCCGGCAGTCGGGGAGTTACAGGACATTCTCGATCTAGATCTGTCCGGGAATGAATTCTC CGGCGAGATACCGAACGAGATGAACAACCTCAAACTGACAGCGCTCAACTTGTCATCCAATCAACTGACGGGGAGAATCCCAAACAACTACAACAATCTC GCTTACGAGAACAGCTTCCTGGACAATGCGAATCTCTGTGCTGTAAACCCGGTCCTGAACCTTCCCGACTGCAGAAATCGAGGAGGCAGCAATGGCAGCT CCGGCAACAGGCTTTCGTCAAAGTATCTAGCCATGATTCTGGCCTTGGCAGTGATCGTCTTCCTTTTCGCTGTTCTACTGACGTTCTCCGCCATCAGAGA CCTGAGGAGGAAGAAGCAGAAACGGGACCTAGCGATGTGGAAGCTTACCTCATTCCAGAGAGTGGATTTCACTCAGGCGAATATATTGGCTAGCCTGAAC GACAGTAACCTGATAGGAAGCGGTGGGTCAGGGAAAGTATACAGGATCCCGTTGAACAGAGAAGGTCATTTCGTTGCTGTGAAGAGGATATGGAGCGATG CCAAGTTGGATGAGAAGCTGGAGAAAGAGTTTGCAGCTGAGGTTCAAATCTTAGGGACAATTAGGCACTCCAATATAGTGAAGCTGATGTGCTGCATCTC GAGCGACGATTCTAAGCTTCTCGTGTATGAGTACATGGAGAACAATAGCCTGGATGGATGGCTCCACGGGAAGAAGACCCCGGAGGCAAATTCAACTCCT ACTGGTGCTCTGGATTGGCCAACGAGGCTCCAAATTGCTGCTGGGACTGCACAGGGCTTGTCCTATATGCACCATGAATGTTCACACCCTATAATTCATA GAGATGTGAAGTCTAGCAACATCCTCCTTGATTCCCAGTTCAAAGCCCGGATCGCGGATTTCGGGTTGGCCAAGATGTTGACTAAATCTGGTGAAGCTCA CACCATGTCTGCTGTAGCAGGCTCATTCGGCTACTTCGCTCCAGAGTATGCATACACAACGAAAGTGAACGAAAAAATCGATGTGTACAGCTTTGGAGTA GTGATGCTAGAACTTGTTACAGGAAGGCAAGCAAACAGTGGAGGGGAGAACACAAGCCTGGCAGAATGGGCATGGAAGCAGGTCGTAGAAGGAAATCAGC CAGTTGAAGAATGCCTAGATCAGGAGATTAAAAAAGAGGACAATGTGGAGGAAATGACAAAGGTGTTCAAGCTGGGTCTGATATGCACAAGTACAGTGCC ATCTTCGAGACCTTCGATGAAGGAGGTAGTGCAGGTTCTGAGGAGGTTGTGCCCTGCAGGGAACAGCAACGGAGAGAAGAGGAATAACAACAGCAAGAAT GAAAGTGAGTTCAATATAGCACCTCTGCTGGGGAATGGGGTTACGTACATCTCAAGTTACAGGCGGAGCAAGAAAGTCAGCGATGTTGATGTTGATATCG ATGACACTTACAGCGTTTGA
AA sequence Show only first row Show all	>Lus10005491 pacid=23182547 polypeptide=Lus10005491 locus=Lus10005491.g ID=Lus10005491.BGIv1.0 annot-version=v1.0 MSKLPLHSLPTHFPLLLLLFLLALPFSVISQDQRAILLNLKQQLGDPPLLHSWSSSSAAASDPCSWPEVKCTADGTVTELYLSNKNITVPIPPTVCNFRN LTLLDLSWNYIPGGFPTLLYNCSSLQYLDLSQNYFVGPLPADVDRLSSSLSYIDVGANNFSGDIPPSIGNLTELRTLRLYQNQFNGTFPKEIGNLANLES LEMAFNEFVPSPIPPQFGKLKNLSYFWMRSANLIGKIPEWFADLPNLQHLDLAANHLEGGLLGGLLSHPNLQILYLFHNQLSGEIPKNVSALNLIEIDVG MNSLSGSVSEDFGKLKKLEILNLFNNKLSGGLPSSIALLPALKEMKLFTNNFTGELPTELGLHSKLEIFDIATNGFSGRLPENICAGGVLEGLVASENKL SGEVPKSVGNCHHLKTIQLYGNNFSGELPPGVWRLVNMTYLMLSDNSFSGPLPSAIAWNLSRLEIHNNNFSGPIPKGVADWKGLVVFKASNNQLSGEIPV ELTSLSRLITLLLDGNQLSGKFPSQIISWKSLSSLHLSRNKLSGPIPPAVGELQDILDLDLSGNEFSGEIPNEMNNLKLTALNLSSNQLTGRIPNNYNNL AYENSFLDNANLCAVNPVLNLPDCRNRGGSNGSSGNRLSSKYLAMILALAVIVFLFAVLLTFSAIRDLRRKKQKRDLAMWKLTSFQRVDFTQANILASLN DSNLIGSGGSGKVYRIPLNREGHFVAVKRIWSDAKLDEKLEKEFAAEVQILGTIRHSNIVKLMCCISSDDSKLLVYEYMENNSLDGWLHGKKTPEANSTP TGALDWPTRLQIAAGTAQGLSYMHHECSHPIIHRDVKSSNILLDSQFKARIADFGLAKMLTKSGEAHTMSAVAGSFGYFAPEYAYTTKVNEKIDVYSFGV VMLELVTGRQANSGGENTSLAEWAWKQVVEGNQPVEECLDQEIKKEDNVEEMTKVFKLGLICTSTVPSSRPSMKEVVQVLRRLCPAGNSNGEKRNNNSKN ESEFNIAPLLGNGVTYISSYRRSKKVSDVDVDIDDTYSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	0	1
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	2.8	0.8325
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	6.3	0.6834
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	6.3	0.7844
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	9.5	0.7705
AT5G18310			unknown protein		Lus10021984 [exp]	10.4	0.6968
					Lus10005523 [exp]	10.7	0.7843
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	11.4	0.7384
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	11.9	0.7896
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10002208 [exp]	14.1	0.7153
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	14.2	0.7947

Compare expression of checked genes

Lus10005491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.