Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20370 61 / 3e-12 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT4G13990 56 / 2e-10 Exostosin family protein (.1) AT2G29040 53 / 2e-09 Exostosin family protein (.1) AT2G32750 49 / 3e-08 Exostosin family protein (.1) AT2G31990 49 / 4e-08 Exostosin family protein (.1) AT5G62220 42 / 2e-05 ATGT18 glycosyltransferase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016532 [exp] 138 / 5e-40 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10040003 [exp] 81 / 7e-22 AT2G20370 48 / 4e-08 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10001578 [exp] 84 / 2e-20 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 84 / 2e-20 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 62 / 8e-13 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 62 / 9e-13 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10003440 [exp] 59 / 7e-12 AT2G29040 204 / 3e-63 Exostosin family protein (.1) Lus10006694 [exp] 57 / 1e-10 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 56 / 2e-10 AT4G13990 499 / 1e-173 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032500 [exp] 69 / 3e-15 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 69 / 4e-15 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 69 / 5e-15 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 61 / 2e-12 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.015G132600 [exp] 41 / 3e-05 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.012G130700 [exp] 39 / 0.0002 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G105300 [exp] 38 / 0.0003 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.003G112200 [exp] 38 / 0.0004 AT4G22580 583 / 0.0 Exostosin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005492 pacid=23182569 polypeptide=Lus10005492 locus=Lus10005492.g ID=Lus10005492.BGIv1.0 annot-version=v1.0 ATGAGGGAGGAGGTGATTTGGCTGATTCCGACGGTGGTGTATGCTGATCCGCGGTCTAGATTGGAGATGTTGGAGGACGCGTTTGATCGGACGGTGAGTG GGGTTTTGGAGAGGGTTGAAAGGGCTAGGAAGGCGATGGAGGCAGGGAGGAATTTGACGGTGACGTCGGAGAAGGAAGAGGAGAATAACTGGAAGAAGTC GACGGCAGTTGGGGATGTTGTGCTGCATCCTTGTGATCATTTTTTTGTTAGGGAGGATGAGTATAAACCTTAG
AA sequence Show only first row Show all	>Lus10005492 pacid=23182569 polypeptide=Lus10005492 locus=Lus10005492.g ID=Lus10005492.BGIv1.0 annot-version=v1.0 MREEVIWLIPTVVYADPRSRLEMLEDAFDRTVSGVLERVERARKAMEAGRNLTVTSEKEEENNWKKSTAVGDVVLHPCDHFFVREDEYKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	0	1
AT1G62935			unknown protein		Lus10009297 [exp]	3.9	0.9227
AT4G24700			unknown protein		Lus10017951 [exp]	5.0	0.9025
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	5.6	0.9303
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	8.0	0.9296
					Lus10006918 [exp]	11.8	0.9218
					Lus10007508 [exp]	13.2	0.9218
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	14.1	0.8566
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	14.5	0.9218
AT1G04670			unknown protein		Lus10004041 [exp]	15.7	0.9218
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	16.7	0.9218

Compare expression of checked genes

Lus10005492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.