Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21700 605 / 0 Protein of unknown function (DUF2921) (.1) AT1G52780 179 / 7e-46 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006025 [exp] 1834 / 0 AT4G21700 627 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10030937 [exp] 471 / 2e-150 AT4G21700 504 / 3e-163 Protein of unknown function (DUF2921) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052500 [exp] 980 / 0 AT4G21700 638 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.003G087400 [exp] 577 / 0 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.001G175600 [exp] 157 / 6e-39 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.006G187000 [exp] 111 / 1e-24 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [flax] [poplar] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Lus10005493 pacid=23182545 polypeptide=Lus10005493 locus=Lus10005493.g ID=Lus10005493.BGIv1.0 annot-version=v1.0 ATGATTAAATCAGGCGTTGGTCGATCGGCGTCTCCTCCTTCGTTGCTGCTCAAATATACTCTCCGACATAGCTCAATGCTGATGCGATGGATCGTCTTAT TTATCTCCATCGCGTGCCTCATTCTGGCCGACGGAAAGGCGGCCTTCTCGTCTGCCAATTTCCTTGTGGACTACCACAGGTTCTGCCACCAAACCGTCCC GGAGTCTCCCGCAACTGCGGTACCGATGAATTTCTCCCGCGGCGAAGATAGGGATCTCCACTTCGACATTGCCTACTTCACAGGCGGCAGCCAAATCTTC CCTGGGAAACCCACCGCTGAGTCCGATGGAATTTCGCTCTCTTTCCACCCCAAGCGTCGCACTATCTACCTTACTGAGAATCCTGACGTGCTGAAGCTCC AAGCGACTCTCAGGTTCCACCTCCCTCCCCGTGGTTACTCTATGTGGCACCGGAATTTGAGACAGATCCGTTTCCGTGGTCCCAGAATTCCAGTGCGGAC CAAGTCCATTGGATTCGAGTTCTATGGCTTTTGGTCAAGGAGTACAGGGGACCTGTGTATGGTGGGATCTGAATCCAGTCTTGCCAACTCGCTTGATGCA AGTTCTGCTCCCTCTTCCGGTGTTGTACTGAAGCTCAAGTATCCGGTTATTGCTGGTGGTGCTGGGAATGTAAGTAGTTTGATTCGCGGCTCTTTGGAGA GTACAATTCCCGGAGATGGTTTGAACTATTTCGAACCTGTTTCTATACTGGCTGTACCTCACTTTGGCGAGTACAACTACTCATTGATGAGTGAGGGTAC TGGGAATTGCTTAGGTCGAAGAGATGTTGGTGGTGAATTATATGGGAATCTTCATCTTGAGTTACAACAACCAAGTCTTTGCTTATCTCAGTTGTACCAG TATGCTAGGATTTTCGAATTGGAGTATGGTAGTGAATGTAGTGGGAATGCGAATGGCAGCAAGTGCAATCCTCTTAAAGTTGACTCTCAGGTTTTGCCGG GATTCATGACTATTCAAGGTATTAGATGTGATGAGCACGGTATCAGAGTTTTGGTATGGTTTCCGAACTCTATTGAATACTCATCTCGAGCTTTTGGTTA TGGCAGAGTTTTCAATCCGAACAATATGCTAATTGGTGAGGGTATCTGGGATGAGATGGAGAATAAACTGTGTGTCATGGCTTGTAGAGTCTTAAATTTT AAGGATTCGCTGCATAATGCTTCAGTTGGTGATTGCTCAATTCAATTCAGCTTGAGATTTCCCAAAAGGTTGACCATTCAACATCAGAGTACCGTAGTTG GGCAAATCTCTAGCAGCAGAAGTGTCAATGACAGTGGCTACTTTCCTCCGGTTGGTTTTCATGGCTTTGGGAATAAGGTGAGGGGACTGCCTGGGCTGGA ATATAAATATACTGTACTTGACATGGTTGCCAAATCTTGTGCTGGAAAGAAAATCACAAAAGGAAAAGGGACTTACCCTAGTGCTTATTCGTTTGATATG AGATTTGACATGTCAGTGAGCAACAGCGAGGGACAGAAAGCAGAAGGTAATTCTAGCCCTTTTTTTGTTGGCGATCAGTTCTATCAGCCATACCGAATGA ACAGCAAGAATATCAGACTCCTAAATGTGAGTTACAAGATCAGCTTCACGCCATCTTCTGGTTTTAAGTTGGGAGATGATCTTTTGTCTAATAGATCTGT TGATATTTCGGCTGAGGGAGTATATGATAAAGACAATGGTGTGCTGTGTATGATTGGTTGCCGCCATTTGGTCTCACATATTAAAAACCCTAGTAGAAAT GAAACTACTGATTGTAAGATCCTTATCACCATGAATTTTTCTCCTCTGAATTCAAAAGGTGTAGCTGATATCAAGGGAATCATCGAAAGTATGCGGGGGA AGGAAGATCCTCTTTATTTTGGGAAGCTGCAGACATCTTCACATGCAATTTACATTAAACAAGCCTCTGACTCTATTTGGAGAATGGATATAGAGATTGT CTTGGTATTAATTTCTAATACCCTTGCTTGTATATTTATTGGATTGCAACTTTATCACGTAAGTAAGTATCCTGAAGTGCTGCCCTTCATCTCTTTTCTA ATGCTCGTTGTTCTCACATTGGGTCACATGATACCGTTGCTATTAAACTTCGATGCGATGTTCACACAAACCTCTAGCCGACAGAATGTGTTTCTTGGAA GTGGTGGGTGGCTCGAGGTGAATGAAGTAATAGTGAGGGTGGTTACAATGATAGCTTTCCTTCTGCAGTTCCGATTTCTCCAACTTTCTTGGTCTTCCAG GCAGACTGATGAAAGTCGCAAAAGCTTGTGGCTTTATGAGAGAAGGGTTCTTTATTTGTCTTTACCACTTTATGCAGTTGGTGGGTTGATTGCTTGGTAT GCACACAGTTGGAAAAATTCCTACACGAGACCGTATCTCCGATTTCGTAATCGGATGTATCAACAGCACTATCCTTGGGACGACCTCAAGTCTTATGCTG GTCTCATTCTTGATGGTTTTTTGCTCCCACAGATAGTGTTCAACTTAGTGTTAAACTCAAGTGAAAATAGTCTTTCTGTGGCTTTTTACTTGGGGGCAAC TATTGTCCGCTTGGTGCCACACGCATATGATCTTTATAGGGCTCATAGTGCCCCCTGGTACCTTGACTTATCGTACATATATGCAAATCACAGACAAGAC TTTTACTCCACATTTTGGAACATTGTCATCCCCATTGGTGGTTTGCTGTTTGCTGCGATCATTTACTCCCAGCAGAGGTTTGGTGGCCGTATTATTCTGC CAAAGAGATTTAGAGGGACTTCTGGCTATGAAAAGGTACCTACTGTCAACAGTGAGGAAATGACTACATATGGTCAACAACAAATTACTCTAGAAGGATA G
AA sequence Show only first row Show all	>Lus10005493 pacid=23182545 polypeptide=Lus10005493 locus=Lus10005493.g ID=Lus10005493.BGIv1.0 annot-version=v1.0 MIKSGVGRSASPPSLLLKYTLRHSSMLMRWIVLFISIACLILADGKAAFSSANFLVDYHRFCHQTVPESPATAVPMNFSRGEDRDLHFDIAYFTGGSQIF PGKPTAESDGISLSFHPKRRTIYLTENPDVLKLQATLRFHLPPRGYSMWHRNLRQIRFRGPRIPVRTKSIGFEFYGFWSRSTGDLCMVGSESSLANSLDA SSAPSSGVVLKLKYPVIAGGAGNVSSLIRGSLESTIPGDGLNYFEPVSILAVPHFGEYNYSLMSEGTGNCLGRRDVGGELYGNLHLELQQPSLCLSQLYQ YARIFELEYGSECSGNANGSKCNPLKVDSQVLPGFMTIQGIRCDEHGIRVLVWFPNSIEYSSRAFGYGRVFNPNNMLIGEGIWDEMENKLCVMACRVLNF KDSLHNASVGDCSIQFSLRFPKRLTIQHQSTVVGQISSSRSVNDSGYFPPVGFHGFGNKVRGLPGLEYKYTVLDMVAKSCAGKKITKGKGTYPSAYSFDM RFDMSVSNSEGQKAEGNSSPFFVGDQFYQPYRMNSKNIRLLNVSYKISFTPSSGFKLGDDLLSNRSVDISAEGVYDKDNGVLCMIGCRHLVSHIKNPSRN ETTDCKILITMNFSPLNSKGVADIKGIIESMRGKEDPLYFGKLQTSSHAIYIKQASDSIWRMDIEIVLVLISNTLACIFIGLQLYHVSKYPEVLPFISFL MLVVLTLGHMIPLLLNFDAMFTQTSSRQNVFLGSGGWLEVNEVIVRVVTMIAFLLQFRFLQLSWSSRQTDESRKSLWLYERRVLYLSLPLYAVGGLIAWY AHSWKNSYTRPYLRFRNRMYQQHYPWDDLKSYAGLILDGFLLPQIVFNLVLNSSENSLSVAFYLGATIVRLVPHAYDLYRAHSAPWYLDLSYIYANHRQD FYSTFWNIVIPIGGLLFAAIIYSQQRFGGRIILPKRFRGTSGYEKVPTVNSEEMTTYGQQQITLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	0	1
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	1.4	0.9456
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	2.0	0.9486
AT5G47400			unknown protein		Lus10007801 [exp]	2.6	0.9041
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	5.7	0.9341
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	6.0	0.9290
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	6.3	0.9133
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	8.0	0.8874
AT5G57460			unknown protein		Lus10004736 [exp]	10.2	0.8890
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	11.4	0.8921
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	11.5	0.9102

Compare expression of checked genes

Lus10005493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.