Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25840 437 / 7e-151 OVA4 ovule abortion 4, Nucleotidylyl transferase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158000 [exp] 503 / 1e-176 AT2G25840 549 / 0.0 ovule abortion 4, Nucleotidylyl transferase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence Show only first row Show all	>Lus10005494 pacid=23182554 polypeptide=Lus10005494 locus=Lus10005494.g ID=Lus10005494.BGIv1.0 annot-version=v1.0 ATGGGACGTGCAATGCTCTCTCCGTTTGTAATCCTCTCCAACTCTGCTCCCCGCTTTGATTCTTCCCTCGGAGGACTGATTTCCCCAACTGGCAGACGTC TCCCTGGTTTCCGCCGTTTCTGCTCCGCCCTTTCGCTCTCTCCTTCTGAATCATCATCTTCATCTTCTTCTTCTTCCACTGTTGCAAGGAAAAGAGTGGT CTCGGGAGTCCAGCCAACGGGGTCTATTCACCTTGGCAATTACCTTGGTGCCATAAAAAATTGGATAGCTCTTCAGGACACATATGACACTTTCTTCTTC ATTGTAGACCTTCATGCAGTTTTCTTCTGCAAGTGGGCTAGTAATCCAAGGTGGCTAGGAGTTGAGAGACTGATATGCAGCACAGCACTGCCTGCTGTTT GCGCCACTGTTTCTAAAATCATGGCTTTAGATATGCATCATCAACCTACAGCAGAGAAGCACCTTGTCTTGGAAACATATTCATTAACACTGATCGGAAG ACGTAGAGTTCCTTTTCTTTTGTTAGGGTTCTCTACTCAGATGACAGTTACTCATTTATCAGCATTCTGCAGACCTCTCTGCTGTATGCGTCATAATAAT CAAAATCAAATTACGTTACCATATGAAACCAATCAGTTGTCAAAGGCAACTAGGGATACAGCAGCACTTTACTTGGCATGTGGCGTTGACACTGCAAAGG CTTCTGTCTTTGTTCAGTCTCATGTACGTGCCCATGTAGAATTGATGTGGCTTTTAAGTGCTGCTACACCAATTGGTTGGTTAAACAGAATGATTCAGTT CAAAGAGAAGTCCCGTAAAGCGGGGGATGAAAATGTTGGTGTTGCACTTTTGACATATCCTGTGCTGATGGCTTCTGATATTCTCCTATACCAGTCTGAT TTCGTTCCAGTTGGGGAGGACCAGAAGCAACATCTGGAGTTGACTAGAGAGCTGGCTGAGCGTGTCAACTATCTATATGGAGGCAGGAAGTGGAAAAAAT TAGGAGGACGAGGAGGTTCTATCTTCAAGGTTCCAGAGCCGCTTATACCACCAGCTGGGGCACGAGTAATGTCTCTAACTGATGGACTTTCCAAGATGTC CAAGTCTGCTCCTTCAGATCAATCACGAATCAATCTTCTTGACCCGAAAGATGTCATAGCCAACAAGATCAAACGTTGCAAAACTGATTCCTTTCCAGGG CTTGAATTTGATAATCCTGAAAGGCCTGAATCCAGTAATCTGCTTTCAATATATCAGCTTGTTTCAGGAAAAACAAAAGAGGAAGTTTCAGAGGAATGTC AAACCATAAATTGGGGCACGTTCAAGACTGTTCTAACGGACGCCTTGGTCGAACATTTGCATCCCATACAGTTTTCAGTTGGTCACCATCAGCTTACGTT TTGGACTTTCCAGGCTCGCTATGGGGAAATAGTGTCTGACCCGACATATCTGGACAGAGTGTTGGATGATGGTGCAATGAAGGCTTCAGAAATAGCAGAT GGCACTCTGAATAACTTATATCAAGCAATGGGATTCTTGAGACGATGA
AA sequence Show only first row Show all	>Lus10005494 pacid=23182554 polypeptide=Lus10005494 locus=Lus10005494.g ID=Lus10005494.BGIv1.0 annot-version=v1.0 MGRAMLSPFVILSNSAPRFDSSLGGLISPTGRRLPGFRRFCSALSLSPSESSSSSSSSSTVARKRVVSGVQPTGSIHLGNYLGAIKNWIALQDTYDTFFF IVDLHAVFFCKWASNPRWLGVERLICSTALPAVCATVSKIMALDMHHQPTAEKHLVLETYSLTLIGRRRVPFLLLGFSTQMTVTHLSAFCRPLCCMRHNN QNQITLPYETNQLSKATRDTAALYLACGVDTAKASVFVQSHVRAHVELMWLLSAATPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSD FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGSIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSFPG LEFDNPERPESSNLLSIYQLVSGKTKEEVSEECQTINWGTFKTVLTDALVEHLHPIQFSVGHHQLTFWTFQARYGEIVSDPTYLDRVLDDGAMKASEIAD GTLNNLYQAMGFLRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	0	1
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	1.0	0.9016
					Lus10018814 [exp]	4.7	0.8617
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	5.0	0.8812
AT2G38780			unknown protein		Lus10019776 [exp]	5.2	0.8872
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	5.3	0.8932
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10002108 [exp]	5.3	0.8581
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	6.3	0.8833
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	6.9	0.8777
AT1G64355			unknown protein		Lus10032371 [exp]	8.5	0.8621
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	8.8	0.8639

Compare expression of checked genes

Lus10005494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.