Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32820 537 / 8e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007462 [exp] 1048 / 0 AT4G32820 1898 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057900 [exp] 714 / 0 AT4G32820 2023 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005496 pacid=23182558 polypeptide=Lus10005496 locus=Lus10005496.g ID=Lus10005496.BGIv1.0 annot-version=v1.0 ATGATCATCTCGGTTAGATTTCCCGAAGCTCAATCGTTTGTAACCCGTTCAAAACCAAGTAAGTGCCTAATTAACCGTGTGTCAAGAAAAAGGAAGTGGA GAGAGATCAGTAGTGAGTGGGCTTGGAAGGAATTTGAAACAGTAGAAATCCAAAACCTTTTTCCTAAAAAAACACTATTCAGGACGACCGAGGCCGTGCG AGCCGGTGAATGCTGGAACCCGTCATTTCCTGCCCCCTTTTCACTAAAGACTGCTCATCAAGGAAATCATACCGTCGCCGTAAACCCCCCTAACGGTGCT CTGGAAGGAGAGGCGAGGCAGCGGCGGATCTGCTTGAATTCAGGGGCCGAGTTCTCCTTCGCAGCCATCAACGATACTGATTCCACGCATCAATGGGAAC CTTTAGCTCCCACGAAAGAAGCTCAGGCCGGTCTACTCACCACCATCTTTGAATCTCATCTTACTCAAACATACCATGACGGTCTGCTCCAATTGCAAAC GAAACAATATGACAAAGCTCGTCAATTGTTGGAGTCTGTTTTAAAAGACCCTCTTATCTCTAATGCCCATGAGGTTGATGGGAATGCTAGCGATAGTCAT ATGCAGCAGCTCAGATTTTTGGCGCTGAAAAACTTAGCCACTGTTTTCCTCCAGCAAGGTTCAGCACATTATAAGAGTGCTCTTCAATGTTACCTTCAAG CCGTTGACATTGACACCAAAGATTCTGTTGTCTGGAATCAGCTGGGAACATTGTCGTGTTCCATGGGTTTGCTCAGCATTTCACGATGGGCATTTGAGCA GGGACTTCTATGCAGCCCTAACAACTGGACATGCATGGAGAAGTTATTAGAAGTTCTAATAGCAATTGGTGATGAGGTTTCCTGCCTTGCCGTAGCGGAG TTAATTTTGAGGCACTGGCCTTCTCATTCTCGTGCTTTGCATGTGAAATGCACTATCGAAGAGTCAGATCCAGTTCCATTTGCACCTAGAGGTATTGATA AACTGGAACCAAAACATGCCCGCCTTAAGTTCCTAGACAAGAGGAAAATAACTGAGGAGAATCTTGATGAGGTTCTTGCTAGAAAGCGGCTAAATCAGAC CATTGAGTTGAGCCTGACTGGAGTTTCATGGGGGGCTCTCATTGATGCCCTTTTGGAGATCTTACTACCCCTCAGTGGGTATGATACTGAGCTCGGACCT GATAAACTTAAGAAATCTGGGGATATCGGGTTAAGTATAAAACTTCCATCAGATATGGGCTCTCCTGAAAGGAAAAGGCTTATTGACTCCCAGACTAGTC AATGCATGTCTCTCAGTAATAGTAACTCGGAAAAAATTGGTTCTGTTAAAGATAGAGAAATGAATAGTCTCGATGAACAACCTCATGAGAGACGCAGTAC TCGTCTTGAAAGGCGTAGGAGTCGTAAACCTAGGAAAGAAGAAATGGGCTATGGTGGCAGCAAGGATTCGGTCAATGTTGTGCTCCAATATCTAGAGCCT TTCATCGTTAGCACATCCCCGGGAGAAAATTCCGAACGGGAAGTTACTTGTTCTGTTCTGCATACGGATAACGGTAAATCACTGGACAAGGAGCTGAAGG ATATTTCATCGTTTGTGATGGAAACTTCTAAAAATTATGGTGCTTACCATGTCGCCCACTTGCTTCTAGAGCATGTTTCGACTGGAGATCTTATGCGTCC AGATGAATATCTCAAACTCCTAGAATTGGAAAGGTTGACAAGAAATTGGGGTCAAGATAGGACCGGTGAGTGTAGTCTTTTTCTTGCTGAGGTGTACTAT GACCTTGCCTTTTTTCCTTCCAATGCTTTGAAGCTCTCAGATTTCCTATCTGAAGCATCATATCATCTTTGCAAAATTGTTGAATCTGTAGCCCTGGACT ATCCTTTACCCCTAACCCATGAAAATGCTGGTGGGAGTTGGTTTGATGACAAGTGTTCTGGAGATGAAAACAAAACCTCTCGTTTCTTGGATCTAAATTC CACGGATACCTTGTCAAGTGAAAAGCTTAACTTCTGGATCCGGTACCATTGGTTGAGTGGGAAACTGTGTATCTTGGATGGCAACAAGGCGAAGGCTTAT GAAGAATTCTCTGTTTCCTTGTTGCTGGTGATGAAGAGGGATAGAATGGGTGACTTTTCAGGGACACTTAGGTTAAGTCACCTCAAAGGCGATACAGAGT TAAACGCAGAGAAGATCCTCCATGAAATTAATTTGTTGAAACTTGTTGATATTAATTAG
AA sequence Show only first row Show all	>Lus10005496 pacid=23182558 polypeptide=Lus10005496 locus=Lus10005496.g ID=Lus10005496.BGIv1.0 annot-version=v1.0 MIISVRFPEAQSFVTRSKPSKCLINRVSRKRKWREISSEWAWKEFETVEIQNLFPKKTLFRTTEAVRAGECWNPSFPAPFSLKTAHQGNHTVAVNPPNGA LEGEARQRRICLNSGAEFSFAAINDTDSTHQWEPLAPTKEAQAGLLTTIFESHLTQTYHDGLLQLQTKQYDKARQLLESVLKDPLISNAHEVDGNASDSH MQQLRFLALKNLATVFLQQGSAHYKSALQCYLQAVDIDTKDSVVWNQLGTLSCSMGLLSISRWAFEQGLLCSPNNWTCMEKLLEVLIAIGDEVSCLAVAE LILRHWPSHSRALHVKCTIEESDPVPFAPRGIDKLEPKHARLKFLDKRKITEENLDEVLARKRLNQTIELSLTGVSWGALIDALLEILLPLSGYDTELGP DKLKKSGDIGLSIKLPSDMGSPERKRLIDSQTSQCMSLSNSNSEKIGSVKDREMNSLDEQPHERRSTRLERRRSRKPRKEEMGYGGSKDSVNVVLQYLEP FIVSTSPGENSEREVTCSVLHTDNGKSLDKELKDISSFVMETSKNYGAYHVAHLLLEHVSTGDLMRPDEYLKLLELERLTRNWGQDRTGECSLFLAEVYY DLAFFPSNALKLSDFLSEASYHLCKIVESVALDYPLPLTHENAGGSWFDDKCSGDENKTSRFLDLNSTDTLSSEKLNFWIRYHWLSGKLCILDGNKAKAY EEFSVSLLLVMKRDRMGDFSGTLRLSHLKGDTELNAEKILHEINLLKLVDIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10005496 [exp]	0	1
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	5.2	0.8417
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	7.5	0.8351
AT1G73350			unknown protein		Lus10026363 [exp]	15.2	0.8269
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	24.5	0.8394
					Lus10031452 [exp]	29.7	0.8123
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	30.2	0.8170
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	36.1	0.8098
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	36.5	0.8278
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	49.8	0.8232
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	51.1	0.8200

Compare expression of checked genes

Lus10005496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.