Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 1678 / 0 unknown protein AT4G32920 1542 / 0 glycine-rich protein (.1.2.3) AT5G47020 1078 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007461 [exp] 2253 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10043045 [exp] 1385 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 1257 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10007257 [exp] 827 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10000229 [exp] 182 / 7e-53 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3) Lus10007259 [exp] 129 / 8e-33 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 98 / 1e-23 AT5G47020 169 / 1e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234500 [exp] 1842 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 1826 / 0 AT5G11700 1779 / 0.0 unknown protein Potri.003G086200 [exp] 1135 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1120 / 0 AT5G47020 1624 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005497 pacid=23182574 polypeptide=Lus10005497 locus=Lus10005497.g ID=Lus10005497.BGIv1.0 annot-version=v1.0 ATGGCTCCATTCCCTCTTACTCTCCTCCATTCTCTCTTCTTCTTCTTCGCCCTCATAGCATCATCCGCCGCCATACCCGAATCCTCTTCTTCGTATTCCG ATGCCGATGCGGATTCTGATTCCGCTTCCTACCTTTCTCTCTTTCATCAAGACTACTCTCCTCCCTCCCCTCCTCCTCCGCCTCCCCCCCCCCCTTCCCT TTCATGCACCGACGACCTCCACGGAATCGGCTCCTTGGACACTACTTGCCAGATAGTCTCCGATGTCAACCTAACATCCGACGTCTACATCCAGGGCCAA GGCAACTTCTACATACATCCCGGGGTCAGCTTCAGCTGTCCTTCCCCTGGCTGTTCAATCACCCTCAACATCTCCGGCAACCTCACCCTCGCTCCCAACT CCTCCATCGTCGCCGGTGCCTTCGAACTCTTCGCCTCCAATGCCTCCTTCCTTAACGGTACCTTCCTCAACACCACCGGCTTGGCTGGGGATCCGCCTCC CCAAACCAGTGGCACACCTCAAGGTGTCGATGGTGCTGGTGGAGGCCATGGCGGTCGTGGCGCTGCTTGCTTAGTCGACGTCACCAAGCTCCCCGAAGAT ATTTGGGGTGGGGATGCATACTCATGGGCTAGTTTGCAGGAGCCTTGTAGTTATGGGAGTAAAGGTGGAACTACCAGTAACGAGGAGGATTACGGTGGGG GTGGCGGTGGAATGGTGAGGATGACCATTGATGATTATATAGAGGTTGATGGATTTATTTTAGCTGATGGAGGGGACGGTGGTACCAAGGGAGGCGGTGG TTCTGGCGGCAGCATTTACATCAAGGCTTATAAGATGACGGGTAGTGGCGAGATTAGTGCTTGTGGAGGAAGTGGTTTTGCTGGAGGAGGTGGAGGAAGA ATTTCTGTGGACATTTTCAGTAGACACGATGATCCTCGAGTATTTGTGCATGGAGGAAGTAGTCGTGGCTGTCCGGAAAACGCTGGTGCTGCCGGGACCC TATATGATGCTGTTCCACGAAGTCTTATTGTTAGCAATGACAATCTGTCAACCAATACAGACACTCTTCTGCTGGACTTCCCTAATCACCCCCTTTGGAC AAACATTTATGTCCGGAATCATGCTCGTGCTACAGTTCCATTGCTCTGGAGTCGTGTCCAGGTGCAAGGACAGATAAGTTTGCTGTCTGGCGGACTACTG AGTTTTGGGCTAGCTCATTACGCTACTTCTGAATTTGAACTATTGGCTGAAGAACTATTAATGAGCGACTCTGTAATGAAGGTTTACGGAGCTCTACGCA TGACTGTGAAAATGTTCTTGATGTGGAATTCCGAAATGCTCATAGATGGAGGTCAAGATGCTGCTGTTGCGACTTCCTTGCTTGAAGCCAGTAATTTAGT TGTTCTCAGGGAGTCATCGGTCATACAGTCTAATGCGAATCTGGGTGTTCATGGACAAGGTTTGTTGAATTTGTCTGGACCAGGTGACAGGATTGATGCC CAACGTCTTGTCCTATCATTGTTCTACGGTGTTCATGTTGGTCCTGGATCTGTTTTACGTGGTCCTCTGGAGAATGCAACTAGTGATGCTATTACACCAC AACTCCATTGTGAGCTTGAAGAATGCCCTGTTGAACTACTTCATCCGCCTGAAGACTGCAATGTGAACTCATCACTGTCTTTTACTCTCCAGATATGCCG AGTTGAGGATATTACTGTCGAGGGACTAGTTGAAGGATCTGTTGTCCATTTCCATCGTGCAAGAACTATATCAGTCCAACCTTCAGGAATAATTAGTGCA TCTGGAACAGGCTGCACGGGCGGTGTTGGAAGAGGTAATTTCTCGAGCAATGGCGTTGGCAGTGGTGGAGGCCATGGTGGCAGAGGTGGGCTAGGATGTT ACAATGATAGTTGCATCGATGGCGGCATTTCATACGGAAACCCAGGATTTCCATGTGAACTTGGTAGTGGCAGTGGGTATGGAAGTTTGGCTGGTTCAAC TGCAGGGGGTGGGATCATTGTGATGGGTTCTCTGGAGCATCCATTGTCAAGCTTGTCTGTTAAAGGATCAGTCAGAGCTGATGGAGAAAGTTTTCAACAA ACTATTAAACATAAGGAGTTTGCTGTTATGAATGGTAGTGGTTGGGGACCTGGGGGTGGCTCTGGGGGAACCATACTTATGTTCTTGAGGACGATAGAAC TTGCTGAGACTGCTCTACTTTCAAGTTCTGGTGGATATGGTAGCCCACAAGGGAGTGGTGGAGGGGGAGGTGGGAGGATTCACTTTCACTGGGCGGATAT TCCAGCTGGTGACGTGTACCAGCCAATTGCCAGTGTGAAAGGGGTCATTCACTCTAGGGGAGGGCTAGGTAAGGATGGAGGTGGTTCTGGGGGAAACGGA ACAGTAACTGGAAAAGCCTGCCCGAAAGGACTATATGGAGTATTTTGCAAGGAATGTCCAGCTGGAACTTACAAGAATGATACTGGATCTGACGAAACAC TTTGCCGACCATGTCCTCCTAATGAGCTTCCTAGTCGTGCTCTATACATTTCTGTCAGAGGTGGTATTGCTGAAACACCATGTCCATATAGATGTATTTC CGACAGATTTCACATGCCGCACTGCTACACGGCCCTTGAAGAGTTGATCTACACATTTGGTGGACCATGGTTATTTGGACTTCTTCTTGTGGGTCTACTC ATTCTTTTGGCACTGGTACTAAGTGTTGCCCGGATGAAATTTGTGGGTGGTGATGAAATACTTGGCCCAGCTCCCACCCAACATGGTTCTCAAATAGATC ACTCCTTTCCGTTTTTGGAGTCATTGAATGAGGTGCTAGAAACAAATAGAGCTGAGGAGTCCCAGAGTCATGTGCACAGGATGTATTTTCTGGGTCCTAA TTCTTTCAGTGAACCTTGGCATCTTCCACACTCACCCCCTGAGCAAATAAAAGAAATAGTATATGAAGGCGCATTCAATACATTTGTCGATGAGATTAAT GCTATAGCTACATATCAATGGTGGGAAGGTTCCATCCACAGTATCCTTTCTGTAACTTTATATCCCTTGGCATGGTCATGGCAGCAATGGCGTCGCAGAA TCAAACTGCAAAGACTTCGGGAGTTTGTTCGATCAGAGTATGATCATGCTTGCTTACGCTCTTGCCGGTCCAGGGCTCTCTACGAAGGGATTAAGGTTGC TGCCACTTCTGATTTAATGCTTGCATATGTTGACTTCTTCCTCGGCGGAGATGAGAAGAGAAGTGACCTTCCTCCTCGACTGTATCAAAGATTTCCAATG TCTATAATCTTTGGGGGTGATGGGAGCTATATCACTCCATTCTCTATTCAAAGTGATAACATTGTCACCAGTCTCATGGGCCAGCTAGTCCCTCCCACCA CATGGTATCGAATGGTGGCTGGTCTGAATGCACAACTTCGATTAGTTCGCCGAGGACGGCTGAGGGTCACTTTCAAGCCAGTCATCAAATGGTTGGAAAC TCATGCTAACCCTGCTTTGAAAGTGTACCAAGTACAAGTTGATCTTGTGAGGCTTCAGGCTACAGCTTGTGGTTATCGTCAGTATGGACTTTTGGTTTAT GCTGCTGATGATGAAAACCAGTATGCAACTAGTGACACTCTTGAGGATACAAAGCAAACCACACAACATTCACGCATGAAGAAGACGCAAGGAGAATATG CATTTGGTCATTTGAGCGAGCCTATTCTCTTAACCCGATCTGATAGCAGCGAGAGTTATTTGCGGCTGACAAGGACTCATGGCTGTGTGATTGATGCTGA CAATTTAAAAACACTTGAAGAGAAGAGAGATATATTTTACATTCTCTCTCTCGTAGTTTATAACACTAAACCAGTTGGCCACCAGGATCTTGTTGGCTTG GTCATCTCAATGCTGCTTCTAGGAGATTTTAGCTTAGTGTTGCTTACTTTGCTCCAGCTGTATTCAATTTCACTGGGGGATGTTTTCCTGGTTTTGTTCA TCTTGCCTATGGGTATTCTTCTGCCTTTTCCTGCTGGGATCAATGCTTTATTCAGTCATGGACCTAGACGTTCAGCTGGGCTTGCGCGTATCTATGCGCT GTGGAATATTACATCATTGATGAATGTGGTTGTTGCTTTTGTGTGCGGGTACGTTCACTACATTGGTCAATCGTCATCAAGCAAGAAGTTCCCCTTTCAG CCGTGGAATATCAGCATGGATGAGAGTGAATGGTGGATATTCCCAGGGGCACTGGTTATATGTAAAATGGTGCAGTCCCAGCTAGTGAATTGGCATGTGG GGAATCTAGAGATTCAAGACCGTTCGCTGTACAGTAATGATTTCCAGCTGTTCTGGCAGTCTTGA
AA sequence Show only first row Show all	>Lus10005497 pacid=23182574 polypeptide=Lus10005497 locus=Lus10005497.g ID=Lus10005497.BGIv1.0 annot-version=v1.0 MAPFPLTLLHSLFFFFALIASSAAIPESSSSYSDADADSDSASYLSLFHQDYSPPSPPPPPPPPPSLSCTDDLHGIGSLDTTCQIVSDVNLTSDVYIQGQ GNFYIHPGVSFSCPSPGCSITLNISGNLTLAPNSSIVAGAFELFASNASFLNGTFLNTTGLAGDPPPQTSGTPQGVDGAGGGHGGRGAACLVDVTKLPED IWGGDAYSWASLQEPCSYGSKGGTTSNEEDYGGGGGGMVRMTIDDYIEVDGFILADGGDGGTKGGGGSGGSIYIKAYKMTGSGEISACGGSGFAGGGGGR ISVDIFSRHDDPRVFVHGGSSRGCPENAGAAGTLYDAVPRSLIVSNDNLSTNTDTLLLDFPNHPLWTNIYVRNHARATVPLLWSRVQVQGQISLLSGGLL SFGLAHYATSEFELLAEELLMSDSVMKVYGALRMTVKMFLMWNSEMLIDGGQDAAVATSLLEASNLVVLRESSVIQSNANLGVHGQGLLNLSGPGDRIDA QRLVLSLFYGVHVGPGSVLRGPLENATSDAITPQLHCELEECPVELLHPPEDCNVNSSLSFTLQICRVEDITVEGLVEGSVVHFHRARTISVQPSGIISA SGTGCTGGVGRGNFSSNGVGSGGGHGGRGGLGCYNDSCIDGGISYGNPGFPCELGSGSGYGSLAGSTAGGGIIVMGSLEHPLSSLSVKGSVRADGESFQQ TIKHKEFAVMNGSGWGPGGGSGGTILMFLRTIELAETALLSSSGGYGSPQGSGGGGGGRIHFHWADIPAGDVYQPIASVKGVIHSRGGLGKDGGGSGGNG TVTGKACPKGLYGVFCKECPAGTYKNDTGSDETLCRPCPPNELPSRALYISVRGGIAETPCPYRCISDRFHMPHCYTALEELIYTFGGPWLFGLLLVGLL ILLALVLSVARMKFVGGDEILGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQSHVHRMYFLGPNSFSEPWHLPHSPPEQIKEIVYEGAFNTFVDEIN AIATYQWWEGSIHSILSVTLYPLAWSWQQWRRRIKLQRLREFVRSEYDHACLRSCRSRALYEGIKVAATSDLMLAYVDFFLGGDEKRSDLPPRLYQRFPM SIIFGGDGSYITPFSIQSDNIVTSLMGQLVPPTTWYRMVAGLNAQLRLVRRGRLRVTFKPVIKWLETHANPALKVYQVQVDLVRLQATACGYRQYGLLVY AADDENQYATSDTLEDTKQTTQHSRMKKTQGEYAFGHLSEPILLTRSDSSESYLRLTRTHGCVIDADNLKTLEEKRDIFYILSLVVYNTKPVGHQDLVGL VISMLLLGDFSLVLLTLLQLYSISLGDVFLVLFILPMGILLPFPAGINALFSHGPRRSAGLARIYALWNITSLMNVVVAFVCGYVHYIGQSSSSKKFPFQ PWNISMDESEWWIFPGALVICKMVQSQLVNWHVGNLEIQDRSLYSNDFQLFWQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11700			unknown protein		Lus10005497 [exp]	0	1
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	3.0	0.9134
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	5.8	0.9158
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	6.0	0.8894
AT4G00800		SETH5	transducin family protein / WD...		Lus10002679 [exp]	7.1	0.9207
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	7.2	0.9061
AT2G38840			Guanylate-binding family prote...		Lus10003085 [exp]	9.1	0.8725
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	11.4	0.8995
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	13.2	0.9015
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	13.3	0.8885
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	18.9	0.9008

Compare expression of checked genes

Lus10005497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.