Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11710 395 / 8e-130 ENTH/VHS family protein (.1) AT2G43160 214 / 2e-60 ENTH/VHS family protein (.1.2.3.4) AT3G59290 207 / 2e-56 ENTH/VHS family protein (.1) AT3G23350 77 / 3e-15 ENTH/VHS family protein (.1) AT3G46540 71 / 6e-13 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007460 [exp] 827 / 0 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1) Lus10025527 [exp] 224 / 3e-62 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 221 / 2e-61 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10011810 [exp] 79 / 2e-15 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10021173 [exp] 79 / 3e-15 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10018571 [exp] 65 / 3e-13 ND / Lus10040824 [exp] 71 / 8e-13 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 69 / 4e-12 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10001995 [exp] 56 / 5e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234100 [exp] 457 / 1e-153 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1) Potri.014G151300 [exp] 224 / 3e-62 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.002G231100 [exp] 223 / 3e-62 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.009G030500 [exp] 67 / 9e-12 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 66 / 3e-11 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 48 / 1e-05 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10005498 pacid=23182561 polypeptide=Lus10005498 locus=Lus10005498.g ID=Lus10005498.BGIv1.0 annot-version=v1.0 ATGGGAAAGCAGTTGCATATAGCAGGTAGGCTTGGCAGTCAGCCCACGGGTTTAGGTTACCCAGTGGAGCCCGCCCGCGAATACAGCCCGAAAGTCTGGG CCCGATGGATGTTTACCGGTTTCGGTCAGGCCCGTGACCCGCGAGTTTCGGGTAATGGGCGGATACGGATAATAACTTATCCGACCCATATCCAATCCTT CGTCGAACAAAATCCAGAAGACAGAAACCCTAATTTATCAAATTTGGGATTTTTCCTTCCGATTCATTTCATACCAGAGGAAGTCACACAGTTGGTGCTA ATTAGGAGGCAGGGTGGAACTTTGAAATCGTTGTTCAGGAGGCAAGACAACAATCTGTTTCTACAACTGCTGAGAAAGCGAGAAGTGAATCTAAAAGTTC TCAAGGTTCCTGAAATTGAACAGAAGGTATTGGATGCCACTAACGATGAGCCCTGGGGTCCTCATGGCACTGTTTTGCAAGAGATTTCTCAGGCCACAAG AAAATACACCGAGTGCCAGATGATTATGAGTGTTCTTTGGACACGGTTGGGTGAGACGGGCAAGGACTGGCGTCTTGTCTACAAGGCACTGTCTGTCATA GAATATTTGGTGGCTCATGGTTCGGAGCGGGCCGGCGATGACATTATAGAACACACTTATCAGATCTCTTCGCTTACAAGTTTTGAATATGTTGAGCCAA GTGGCAAGGATATGGGAATCAATGTGAGAAAGAAAGCTGAAACAATCGTCAACTTATTAAATAGCCAGGAGAAAATACAGGAAGTAAGGAACAAAGCTGC CGCCAATCGCGACAAGTACTTTGGACTTTCTTCCACCGGAGTAACATCCAAGTCAAGTGCAGGCTCATTTGGTAGTAGCAGCAACAGGAGTAGTGATCGG TATGGGGGCTTTAGTGGTGCAAAAGATACCGATGGTTTTAGAGATAGCTACAAGAGCAAGGAGCGGTATGAAGAAAAGACAGATAAGGATGCATATGTAA AATCTCGGCGTGCAGTTGTAGGCGATAATCAAGGAAGCGCTGGAGATAAGGGTTCTACTGGCTTACGCAGCAAGGGTCAATCAAAGTTCACAGTGAAATT TAGCGACACCGGTAAAGAAAGTTCAGTGCCGTCTCAACAGGCTGGTCTTCCCTCTATCAATATTGATGACGATTTGGACGATGATTTTGATCCGCGGGGA AATGCAGGAAGTAAGTCAACTGCTGAAACGTCCAGCCAAGTCGATCTATTTGGACAAAGTTTGATGGATGACCTTTTGGATGTGCAACCTTCGGCTGCTC CTGCAGATATCTCTATTAACGATGACAGTTCCAGGGATGTTGATCTGTTTGCTGATGCAGATTTTGTATCAGCTGAACCCCAGATTGACAAGGGAGCAAG CTCTCAAGCACAGGTTAATCTGTTTGCTTCTCAACCTGCTGCACCTTCTGCTGCTGTTGCTCCGTCAACAATTGATTTCTTTTCTGCTGGTGAACCAACT TTACCAGAGTCCAAACCTCCGAAACTTGACACTGCAACCACCAGTGTTATTGACCCGTTCGCTGCAGTCCCTATGTACAGTTTTGATGGATCTGATCCTT TCGGTGAATTCAGTTCTAGTTCCAGTTCTGCTACAACAGAACCAGTCAAGAATCCTGTAAACAATGCTGGCACAATTAATATGGATGGGAACGTTTTGAA GGATTCCAAGCCTCCTGCAGCAGTGCAAAAGCAGAATTTCCAGGTGAAATCTGGTATATGGGCTGATTCTTTGAGCCGTGGGATAATCGATCTTAATATA TCTGCACCAAAGAAGGTATCCCTGGTAGATGTTGGAGTGGTGGGTGAACTTGGAGGCGGACAGGACGAGAAAGAGAAGACGACAGCAGCACCCCCAGCTT TTTATATGGGGAGAGCAATGGGGACTGGGTCAGGTCTGGGGATGTCAGGGTTTGGTACTGCCTCTCAAGGTTATGCTGCTGCTGCTGCACCTTCATCTGG GTTTACTGCTACATCGTCACAACCGAAGGCAGGTGGTAGCGGTGTGACGGGAGATGACTTCTTCTCGAGCCTTAGCAGCAGCCAACAATACCAGTTTGGT GGTTTCAAGTAG
AA sequence Show only first row Show all	>Lus10005498 pacid=23182561 polypeptide=Lus10005498 locus=Lus10005498.g ID=Lus10005498.BGIv1.0 annot-version=v1.0 MGKQLHIAGRLGSQPTGLGYPVEPAREYSPKVWARWMFTGFGQARDPRVSGNGRIRIITYPTHIQSFVEQNPEDRNPNLSNLGFFLPIHFIPEEVTQLVL IRRQGGTLKSLFRRQDNNLFLQLLRKREVNLKVLKVPEIEQKVLDATNDEPWGPHGTVLQEISQATRKYTECQMIMSVLWTRLGETGKDWRLVYKALSVI EYLVAHGSERAGDDIIEHTYQISSLTSFEYVEPSGKDMGINVRKKAETIVNLLNSQEKIQEVRNKAAANRDKYFGLSSTGVTSKSSAGSFGSSSNRSSDR YGGFSGAKDTDGFRDSYKSKERYEEKTDKDAYVKSRRAVVGDNQGSAGDKGSTGLRSKGQSKFTVKFSDTGKESSVPSQQAGLPSINIDDDLDDDFDPRG NAGSKSTAETSSQVDLFGQSLMDDLLDVQPSAAPADISINDDSSRDVDLFADADFVSAEPQIDKGASSQAQVNLFASQPAAPSAAVAPSTIDFFSAGEPT LPESKPPKLDTATTSVIDPFAAVPMYSFDGSDPFGEFSSSSSSATTEPVKNPVNNAGTINMDGNVLKDSKPPAAVQKQNFQVKSGIWADSLSRGIIDLNI SAPKKVSLVDVGVVGELGGGQDEKEKTTAAPPAFYMGRAMGTGSGLGMSGFGTASQGYAAAAAPSSGFTATSSQPKAGGSGVTGDDFFSSLSSSQQYQFG GFK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	1.0	0.9268
AT3G08670			unknown protein		Lus10025209 [exp]	1.7	0.9155
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	2.0	0.9067
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	2.0	0.9211
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	3.2	0.8982
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022073 [exp]	5.7	0.8853
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030819 [exp]	6.5	0.8901
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	8.5	0.8897
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	10.6	0.8648
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	13.1	0.8888

Compare expression of checked genes

Lus10005498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.