Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25930 298 / 1e-90 PYK20, ELF3 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) AT3G21320 130 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007459 [exp] 1172 / 0 AT2G25930 218 / 1e-59 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Lus10006857 [exp] 115 / 7e-27 AT2G25930 110 / 8e-26 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Lus10037599 [exp] 79 / 3e-15 AT2G25930 88 / 2e-18 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233800 [exp] 553 / 0 AT2G25930 363 / 1e-115 EARLY FLOWERING 3, hydroxyproline-rich glycoprotein family protein (.1) Potri.003G045000 [exp] 288 / 1e-88 AT3G21320 202 / 6e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005501 pacid=23182560 polypeptide=Lus10005501 locus=Lus10005501.g ID=Lus10005501.BGIv1.0 annot-version=v1.0 ATGAAGAGAGGGAAAGACGATGAGAAGATTATGAGTCCATTATTCCCGAGGCTCCATGTGAATGATACTGAGAAAGGAGGGCCGAGAGCTCCTCCAAGGA ACAAGATGGCCCTTTATGAGCAGCTTAGCATTCCTTCCCAAAGGTTTAATCCTGCCGTCTTGCCTCGTACTCCCACTCAACTCAGCAACTTAGCTCCTCC TGGCTCCTCTTCAACCGAGGCAAGTGGCATTGAAAGCAAACGTCCGTATCCTCCGCAGGTTACTCCTATTGCCGATCAATTCCCTCCTTACCAGTCCGCT GCTGTGACCAGGAACTTGAACACTTCTGTAGCCATGCATGGACAGAGGAAGAAGACAGGAGACGAAGATGATTTCACAGTTCCTATCTTTGTACATACAG GTGTGACCCCCTTACAGAGAAAATTTTCAAGTACCATTAGTGGGGAAGAGCTAGCTACACTTTCTAAACATTCAGGTCATTCCAATAAAGTCCAGAATGC TACCGATAACAAACCGCAGTGTGATTCTTCAATTGATCCTCATTTGAGACTTGGAGGAAATGCAAAAGCCTGCATTTCAAGTGGGGATAATTTAGTGACA TCTTCTATCAAGTTGCAGCGAGACAGAGAAAACTTTGCTGATTCTAGAGAAGAAGCTATTGCACAAACAAAGAAGGGATTTCAAAGTAATTATTTGACTG ATGTGAGCAGCTTCCATGGAGACAAGTCTTGTTCGCAACAGCAGGCGTGCTCCCAGTTAAATGACTGTGTACTTGGTGATGCTGTTCCTGAGCTGCAGAG GGTCACTGAGCAAAGTGATATTCTTGTACGAATGGATAACTTGTGTCCAAGTGAACAGCCCTGTAGACGCAATGAGGACGGTGTCACTTATGTTGCCAGG GTGGATGTGTCGTTAGGAGTGGGAAATGCTGATAAAAGTGATGATGTGTCTGAGACTTCTATTATTGACTCTGCCGAACCTCTGGATATGTCTCCTGATG ATGTTGTAGATATAATTGGTCAGAAACATTTCTGGAAAGCTAGAAGAGCAATTGTCAACCAACAAAGAGTATTCGCTGTTCAAGTGTTCGAGTTGCATAG ACTGATCAAGGTTCAACAACTGATTGCTGGTTCTCCGCAGCTACTTGTAGAAGAGAATACCTATCTCGGAAAACCTTCTATGCCTGGCTCTCCAATGAAA AAGCTTCAATCTGAATTTGTTCTGGTGCAGGAAGCACGGACTAGAAAAAGAAAAGATAATTCAGAGGAACCTAGTAATAAGTTGGAAGGTTCTGCTGAGA ATGCAGTTGGAAAGCCATCCTTACTTCCTCTTACAAGTGGTAGCCAGCCATCAGATCATACACCTCATGTAGGAAACCAAGCACCAGTAGCAGGGATTAA TGACAGCAAAACAAGTGCATGGTGCTTTCACCAACCTACTGGGCAGCAGTGGTTGGTGCCTGTGATGTCACCAACAGAAGGACTCGTATATAAACCTTAT GCACCCCTGGGATCAGTGGGAACAGGTTGTGGAGGATGTGGATCATATTGCCCTACGCCCATGATGGGCAACTTTATGAACCCAGGTTACGGCATTCCGC CTTACTTCCATCAGGGAACTGGTGGCCTACCGGGCCCTCCTCCAGTTGGTCATGGTTGCTACCCTCCTTATGGCATGCCGGTCATCAGCCCAGGTATCTC GGGCTCAGCAGTTGAACAACTGAACCGGGTTCCAGTGTCAGGTTCCCATGGTCAAAATAGTCGGTTATCTGGAAGTGGGGCAAATTTTAGTGTGCAGCAT CAGAGCTCAACTAATGTGGAATTGCGAACCCAGAAGAGTGGGGTTATTTCAATGGCGGAGATTCGGGTCTCAACTAAAGAGAGAGAGGTACAAGGAAGTA CAGCAAGTAGCCGCAGCGAGAGAATGGAGGTAGTTGGGAGTGTTCAACAGGTTGATGGAAGAGATGCACTCTATATGTTACCAGCAGCACCTACTGTGGT TCGAGATCCTCATGATGCAGGGCAAGCATCTAGAGTGATCAGGGTAGTGCCTCATAATCCTAGGTCAGCTACTGAGTCTGCCGCTCGGATCTTTCAGTCG ATACAAGAGGAGAGGAAGCAGCAGGAGTCTATTTAA
AA sequence Show only first row Show all	>Lus10005501 pacid=23182560 polypeptide=Lus10005501 locus=Lus10005501.g ID=Lus10005501.BGIv1.0 annot-version=v1.0 MKRGKDDEKIMSPLFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNPAVLPRTPTQLSNLAPPGSSSTEASGIESKRPYPPQVTPIADQFPPYQSA AVTRNLNTSVAMHGQRKKTGDEDDFTVPIFVHTGVTPLQRKFSSTISGEELATLSKHSGHSNKVQNATDNKPQCDSSIDPHLRLGGNAKACISSGDNLVT SSIKLQRDRENFADSREEAIAQTKKGFQSNYLTDVSSFHGDKSCSQQQACSQLNDCVLGDAVPELQRVTEQSDILVRMDNLCPSEQPCRRNEDGVTYVAR VDVSLGVGNADKSDDVSETSIIDSAEPLDMSPDDVVDIIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQQLIAGSPQLLVEENTYLGKPSMPGSPMK KLQSEFVLVQEARTRKRKDNSEEPSNKLEGSAENAVGKPSLLPLTSGSQPSDHTPHVGNQAPVAGINDSKTSAWCFHQPTGQQWLVPVMSPTEGLVYKPY APLGSVGTGCGGCGSYCPTPMMGNFMNPGYGIPPYFHQGTGGLPGPPPVGHGCYPPYGMPVISPGISGSAVEQLNRVPVSGSHGQNSRLSGSGANFSVQH QSSTNVELRTQKSGVISMAEIRVSTKEREVQGSTASSRSERMEVVGSVQQVDGRDALYMLPAAPTVVRDPHDAGQASRVIRVVPHNPRSATESAARIFQS IQEERKQQESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	4.4	0.8269
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	5.5	0.7557
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	7.3	0.8184
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	7.5	0.7488
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	7.7	0.7855
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	7.9	0.8153
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	13.6	0.7756
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	17.1	0.7676
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	18.8	0.7420
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	19.9	0.7588

Compare expression of checked genes

Lus10005501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.